RSAT: regulatory sequence analysis tools (Q39786125)

14 September 2017

RSAT: regulatory sequence analysis tools (English)

1 reference

14 September 2017

8

1 reference

14 September 2017

Morgane Thomas-Chollier

object named as

Morgane Thomas-Chollier

1

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author name string

Olivier Sand

2

1 reference

14 September 2017

Jean-Valéry Turatsinze

3

1 reference

14 September 2017

Rekin's Janky

4

1 reference

14 September 2017

Matthieu Defrance

5

1 reference

14 September 2017

Eric Vervisch

6

1 reference

14 September 2017

Sylvain Brohée

7

1 reference

14 September 2017

language of work or name

English

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publication date

21 May 2008

1 reference

14 September 2017

Nucleic Acids Research

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14 September 2017

36

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14 September 2017

Web Server issue

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14 September 2017

W119-27

1 reference

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

oPOSSUM: integrated tools for analysis of regulatory motif over-representation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Taverna: a tool for building and running workflows of services

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

MEME: discovering and analyzing DNA and protein sequence motifs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Taverna: a tool for the composition and enactment of bioinformatics workflows

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Detection of functional DNA motifs via statistical over-representation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Computational detection of cis -regulatory modules.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Regulatory sequence analysis tools

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Toucan: deciphering the cis-regulatory logic of coregulated genes.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coli K12 DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

REPuter: the manifold applications of repeat analysis on a genomic scale

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Discovering regulatory elements in non-coding sequences by analysis of spaced dyads

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Gibbs motif sampling: detection of bacterial outer membrane protein repeats

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

The value of prior knowledge in discovering motifs with MEME

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Identifying protein-binding sites from unaligned DNA fragments

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

MotifViz: an analysis and visualization tool for motif discovery

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

REPuter: fast computation of maximal repeats in complete genomes.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Identification of consensus patterns in unaligned DNA sequences known to be functionally related.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447775

Discovery of Motifs in Promoters of Coregulated Genes

20 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN304

Discovery of Conserved Motifs in Promoters of Orthologous Genes in Prokaryotes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN304

A web site for the computational analysis of yeast regulatory sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18495751

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN304

1 reference

journals/nar/Thomas-ChollierSTJDVBH08

14 September 2017

1 reference

DBLP Dataset 2021-01-02

release_iw7tr43q5feb3muryfinacshva

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/iw7tr43q5feb3muryfinacshva

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

14 September 2017

1 reference