Cluster-Buster: Finding dense clusters of motifs in DNA sequences. (Q39804240)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12824389%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

title

Cluster-Buster: Finding dense clusters of motifs in DNA sequences (English)

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5 November 2019

1

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5 November 2019

author name string

Michael C Li

series ordinal

2

1 reference

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5 November 2019

Zhiping Weng

series ordinal

3

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5 November 2019

language of work or name

English

0 references

publication date

1 July 2003

1 reference

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5 November 2019

published in

Nucleic Acids Research

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5 November 2019

volume

31

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5 November 2019

issue

13

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5 November 2019

page(s)

3666-3668

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

5 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

Noncoding RNA gene detection using comparative sequence analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

Detection of cis-element clusters in higher eukaryotic DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

A predictive model for regulatory sequences directing liver-specific transcription.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

DNA binding sites: representation and discovery

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

TRANSFAC: an integrated system for gene expression regulation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

Identification of regulatory regions which confer muscle-specific gene expression.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

A novel method to develop highly specific models for regulatory units detects a new LTR in GenBank which contains a functional promoter.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

The hardwiring of development: organization and function of genomic regulatory systems.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

A statistical model for locating regulatory regions in genomic DNA.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

Predicting Pol II promoter sequences using transcription factor binding sites.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

Eukaryotic promoter recognition by binding sites for transcription factors.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=168947

Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12824389

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG540

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12824389%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

DBLP publication ID

journals/nar/FrithLW03

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12824389%20AND%20SRC:MED&resulttype=core&format=json

5 November 2019

1 reference