Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies (Q39886245)

15 September 2017

Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies (English)

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15 September 2017

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9

Eleazar Eskin

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15 September 2017

2

Noah Zaitlen

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15 September 2017

11

Eran Halperin

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15 September 2017

8

Esteban G Burchard

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15 September 2017

4

Celeste Eng

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15 September 2017

Elior Rahmani

1

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15 September 2017

Yael Baran

3

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15 September 2017

Donglei Hu

5

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15 September 2017

Joshua Galanter

6

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15 September 2017

Sam Oh

7

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15 September 2017

James Zou

10

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15 September 2017

28 March 2016

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15 September 2017

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15 September 2017

13

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15 September 2017

5

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15 September 2017

443-445

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Characterization of whole-genome autosomal differences of DNA methylation between men and women

15 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Genetic ancestry influences asthma susceptibility and lung function among Latinos.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Fast principal component analysis of large-scale genome-wide data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Accounting for cellular heterogeneity is critical in epigenome-wide association studies

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Reference-free cell mixture adjustments in analysis of DNA methylation data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

DNA methylation age of human tissues and cell types

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Tobacco smoking leads to extensive genome-wide changes in DNA methylation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

DNA methylation arrays as surrogate measures of cell mixture distribution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Adjusting batch effects in microarray expression data using empirical Bayes methods

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Dominant clonotypes in the repertoire of peripheral CD4+ T cells in rheumatoid arthritis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Epigenome-wide association studies without the need for cell-type composition

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5548182

Finding Structure with Randomness: Probabilistic Algorithms for Constructing Approximate Matrix Decompositions

20 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.3809

21 January 2018

Identifiers

DOI

10.1038/NMETH.3809

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15 September 2017

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15 September 2017

PubMed publication ID

27018579

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