LTR-Retrotransposon Control by tRNA-Derived Small RNAs (Q40139527)

17 September 2017

title

LTR-Retrotransposon Control by tRNA-Derived Small RNAs (English)

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17 September 2017

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Andrea J Schorn

1

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17 September 2017

Michael J Gutbrod

series ordinal

2

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17 September 2017

Chantal LeBlanc

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3

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17 September 2017

Rob Martienssen

series ordinal

4

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17 September 2017

language of work or name

English

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publication date

1 June 2017

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17 September 2017

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17 September 2017

volume

170

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17 September 2017

issue

1

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17 September 2017

page(s)

61-71.e11

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tRNA-derived small RNAs target transposable element transcripts

17 September 2017

cites work

1 reference

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Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues

30 August 2018

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Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals

30 August 2018

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tRNA processing defects induce replication stress and Chk2-dependent disruption of piRNA transcription.

30 August 2018

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A trans-homologue interaction between reciprocally imprinted miR-127 and Rtl1 regulates placenta development

30 August 2018

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Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells

30 August 2018

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The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses

30 August 2018

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Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets.

30 August 2018

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The human Piwi protein Hiwi2 associates with tRNA-derived piRNAs in somatic cells.

30 August 2018

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tRNAs as regulators of biological processes

30 August 2018

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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

30 August 2018

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Small noncoding RNAs in cells transformed by human T-cell leukemia virus type 1: a role for a tRNA fragment as a primer for reverse transcriptase

30 August 2018

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Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3.

30 August 2018

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Zfp819, a novel KRAB-zinc finger protein, interacts with KAP1 and functions in genomic integrity maintenance of mouse embryonic stem cells

30 August 2018

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Endogenous retroviruses function as species-specific enhancer elements in the placenta

30 August 2018

1 reference

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Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA.

30 August 2018

1 reference

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tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Transcriptional silencing of transposons by Piwi and maelstrom and its impact on chromatin state and gene expression

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Embryonic stem cell potency fluctuates with endogenous retrovirus activity

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

The genomic landscape shaped by selection on transposable elements across 18 mouse strains

30 August 2018

1 reference

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Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Uniting germline and stem cells: the function of Piwi proteins and the piRNA pathway in diverse organisms

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

A growth-essential Tetrahymena Piwi protein carries tRNA fragment cargo

30 August 2018

1 reference

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Transposable elements have rewired the core regulatory network of human embryonic stem cells

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Distinct histone modifications in stem cell lines and tissue lineages from the early mouse embryo

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Small RNA class transition from siRNA/piRNA to miRNA during pre-implantation mouse development

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Human tRNA-derived small RNAs in the global regulation of RNA silencing

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET.

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Genetic-epigenetic intersection in trophoblast differentiation: implications for extraembryonic tissue function

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

KAP1 controls endogenous retroviruses in embryonic stem cells

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Eset partners with Oct4 to restrict extraembryonic trophoblast lineage potential in embryonic stem cells

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular double-stranded RNA hybrid

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

The regulated retrotransposon transcriptome of mammalian cells

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Preferential epigenetic suppression of the autonomous MusD over the nonautonomous ETn mouse retrotransposons

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

TRIM28 mediates primer binding site-targeted silencing of Lys1,2 tRNA-utilizing retroviruses in embryonic cells

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Hidden layers of human small RNAs

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Transposable elements and the evolution of regulatory networks

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Transposable elements and the epigenetic regulation of the genome

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

An active murine transposon family pair: retrotransposition of "master" MusD copies and ETn trans-mobilization

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Identification of autonomous IAP LTR retrotransposons mobile in mammalian cells

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

"In the beginning": initiation of minus strand DNA synthesis in retroviruses and LTR-containing retrotransposons

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Human L1 retrotransposition: cis preference versus trans complementation

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Human LINE retrotransposons generate processed pseudogenes

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Epigenetic inheritance at the agouti locus in the mouse

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Promotion of trophoblast stem cell proliferation by FGF4

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Multiple molecular determinants for retrotransposition in a primer tRNA

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Ordered interstrand and intrastrand DNA transfer during reverse transcription

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

Retrotransposition of a mouse IAP sequence tagged with an indicator gene

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5551035

10.1016/J.CELL.2017.06.013

30 August 2018

Identifiers

DOI

1 reference

17 September 2017

0 references

1 reference