Regulated communication between the upstream face of RNA polymerase and the beta' subunit jaw domain (Q40253137)

18 September 2017

Regulated communication between the upstream face of RNA polymerase and the beta' subunit jaw domain (English)

1 reference

18 September 2017

4

0 references

Sergei Nechaev

3

object named as

Sergei Nechaev

1 reference

18 September 2017

Siva R Wigneshweraraj

1

1 reference

18 September 2017

Patricia C Burrows

2

1 reference

18 September 2017

Konstantin Severinov

5

1 reference

18 September 2017

Martin Buck

6

1 reference

18 September 2017

language of work or name

English

0 references

publication date

7 October 2004

1 reference

18 September 2017

1 reference

18 September 2017

23

1 reference

18 September 2017

21

1 reference

18 September 2017

4264-4274

1 reference

Reorganisation of an RNA polymerase-promoter DNA complex for DNA melting.

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Architecture of initiation-competent 12-subunit RNA polymerase II

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Mechanochemical ATPases and transcriptional activation.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Correlating protein footprinting with mutational analysis in the bacterial transcription factor sigma54 (sigmaN).

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Regulatory sequences in sigma 54 localise near the start of DNA melting.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Isomerization of a binary sigma-promoter DNA complex by transcription activators.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Conservation of sigma-core RNA polymerase proximity relationships between the enhancer-independent and enhancer-dependent sigma classes.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Systematic analysis of sigma54 N-terminal sequences identifies regions involved in positive and negative regulation of transcription

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Identification of a DNA-contacting surface in the transcription factor sigma-54.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Activation of Klebsiella pneumoniae and Rhizobium meliloti nitrogenase promoters by gln (ntr) regulatory proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

The helix-turn-helix motif of sigma 54 is involved in recognition of the -13 promoter region

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Enhancer-dependent transcription by bacterial RNA polymerase: the beta subunit downstream lobe is used by sigma 54 during open promoter complex formation.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Mapping sigma 54-RNA polymerase interactions at the -24 consensus promoter element.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Protein-protein interactions mapped by artificial proteases: where sigma factors bind to RNA polymerase

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Positioning of sigma(S), the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Inhibition of Escherichia coli RNA polymerase by bacteriophage T7 gene 2 protein

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

The transcription initiation pathway of sigma 54 mutants that bypass the enhancer protein requirement. Implications for the mechanism of activation.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Minimal machinery of RNA polymerase holoenzyme sufficient for promoter melting

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

RNA polymerase II/TFIIF structure and conserved organization of the initiation complex

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Nucleotide-dependent triggering of RNA polymerase-DNA interactions by an AAA regulator of transcription

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

Roles for the C-terminal region of sigma 54 in transcriptional silencing and DNA binding

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

DNA melting within a binary sigma(54)-promoter DNA complex.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

The sigma 54 DNA-binding domain includes a determinant of enhancer responsiveness.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=524387

The downstream DNA jaw of bacterial RNA polymerase facilitates both transcriptional initiation and pausing

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15470503

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Region I modifies DNA-binding domain conformation of sigma 54 within the holoenzyme

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15470503

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SJ.EMBOJ.7600407

1 reference

18 September 2017

1 reference

18 September 2017

PubMed publication ID

15470503

1 reference