Interactions of the DNA polymerase X from African Swine Fever Virus with the ssDNA. Properties of the total DNA-binding site and the strong DNA-binding subsite. (Q40324204)

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scientific article published on 28 April 2011

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English	Interactions of the DNA polymerase X from African Swine Fever Virus with the ssDNA. Properties of the total DNA-binding site and the strong DNA-binding subsite.	scientific article published on 28 April 2011

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scholarly article

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1 February 2020

Interactions of the DNA polymerase X from African Swine Fever Virus with the ssDNA. Properties of the total DNA-binding site and the strong DNA-binding subsite (English)

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1 February 2020

African swine fever virus

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African swine fever

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Michal R Szymanski

2

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1 February 2020

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Maria J Jezewska

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1 February 2020

Wlodzimierz Bujalowski

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1 February 2020

publication date

28 April 2011

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1 February 2020

Biophysical Chemistry

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1 February 2020

158

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1

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26-37

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1 February 2020

Thermodynamic analysis of the structure-function relationship in the total DNA-binding site of enzyme-DNA complexes

1 reference

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1 reference

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Interactions of the DNA polymerase X from African swine fever virus with gapped DNA substrates. Quantitative analysis of functional structures of the formed complexes

1 reference

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1 reference

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1 reference

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22 September 2017

DNA polymerase X from African swine fever virus: quantitative analysis of the enzyme-ssDNA interactions and the functional structure of the complex.

1 reference

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1 reference

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1 reference

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A general method of analysis of ligand binding to competing macromolecules using the spectroscopic signal originating from a reference macromolecule. Application to Escherichia coli replicative helicase DnaB protein nucleic acid interactions

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Complex of Escherichia coli primary replicative helicase DnaB protein with a replication fork: recognition and structure

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1 reference

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Identifiers

10.1016/J.BPC.2011.04.012

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Europe PubMed Central

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1 February 2020

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1 February 2020

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