AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation (Q40590257)

21 September 2017

AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation (English)

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21 September 2017

8

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21 September 2017

Margus Lukk

5

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Daniel J Gaffney

object named as

Daniel Gaffney

7

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Michael Andrew Quail

3

object named as

Michael A Quail

1 reference

21 September 2017

Sarah Aldridge

1

1 reference

21 September 2017

Stephen Watt

2

1 reference

21 September 2017

Tim Rayner

4

1 reference

21 September 2017

Michael F Bimson

6

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21 September 2017

7 November 2013

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21 September 2017

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21 September 2017

14

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21 September 2017

11

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21 September 2017

R124

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https://scigraph.springernature.com/pub.10.1186/gb-2013-14-11-r124

21 September 2017

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cites work

Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Genome-wide chromatin state transitions associated with developmental and environmental cues

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

An integrated encyclopedia of DNA elements in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Rapid turnover of long noncoding RNAs and the evolution of gene expression

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Inferring direct DNA binding from ChIP-seq

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

seqMINER: an integrated ChIP-seq data interpretation platform

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Variation in transcription factor binding among humans

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

BEDTools: a flexible suite of utilities for comparing genomic features

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Combinatorial binding predicts spatio-temporal cis-regulatory activity

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Fast and accurate short read alignment with Burrows-Wheeler transform

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Functional autonomy of distant-acting human enhancers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Model-based analysis of ChIP-Seq (MACS)

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Combinatorial patterns of histone acetylations and methylations in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

NestedMICA as an ab initio protein motif discovery tool

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

High-resolution profiling of histone methylations in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Galaxy: a platform for interactive large-scale genome analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Active genes are tri-methylated at K4 of histone H3

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Molecular architecture of SMC proteins and the yeast cohesin complex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Condensin and cohesin display different arm conformations with characteristic hinge angles

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Liver-enriched transcription factors and hepatocyte differentiation.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

Comparative epigenomic annotation of regulatory DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

BLUEPRINT to decode the epigenetic signature written in blood.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

RSAT 2011: regulatory sequence analysis tools.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053851

10.1186/GB-2013-14-11-R124

20 August 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

21 September 2017

1004733575

0 references

Fatcat ID

release_cnm3qs5mpza7fhlowkqfx3oi6a

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/cnm3qs5mpza7fhlowkqfx3oi6a

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

21 September 2017

1 reference