Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons (Q41068482)

26 September 2017

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons (English)

1 reference

single cell transcriptomics

26 September 2017

0 references

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

9

Aviv Regev

1 reference

26 September 2017

6

John J Trombetta

1 reference

26 September 2017

Naomi Habib

1

1 reference

26 September 2017

Yinqing Li

2

1 reference

26 September 2017

Matthias Heidenreich

3

1 reference

26 September 2017

Lukasz Swiech

4

1 reference

26 September 2017

Inbal Avraham-Davidi

5

1 reference

26 September 2017

Cynthia Hession

7

1 reference

26 September 2017

Feng Zhang

8

1 reference

26 September 2017

language of work or name

English

0 references

publication date

28 July 2016

1 reference

external data available at URL

26 September 2017

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84371

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

26 September 2017

353

1 reference

26 September 2017

925-928

1 reference

26 September 2017

6302

1 reference

describes a project that uses

26 September 2017

snRNA-Seq

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brain

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

cites work

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

1 reference

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Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

26 September 2017

1 reference

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Noncanonical Sites of Adult Neurogenesis in the Mammalian Brain

26 September 2017

1 reference

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A mechanism for the segregation of age in mammalian neural stem cells

26 September 2017

1 reference

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Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

26 September 2017

1 reference

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Spatial reconstruction of single-cell gene expression data

26 September 2017

1 reference

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Interneurons. Fast-spiking, parvalbumin⁺ GABAergic interneurons: from cellular design to microcircuit function.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Bayesian approach to single-cell differential expression analysis

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Meis2 is a Pax6 co-factor in neurogenesis and dopaminergic periglomerular fate specification in the adult olfactory bulb

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

RNA-SeQC: RNA-seq metrics for quality control and process optimization

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Inhibiting the breakdown of endogenous opioids and cannabinoids to alleviate pain

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Fast gapped-read alignment with Bowtie 2

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

New Neurons in Aging Brains: Molecular Control by Small Non-Coding RNAs

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Adult neurogenesis in the mammalian brain: significant answers and significant questions

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Integrative genomics viewer

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Differential expression analysis for sequence count data

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Dissection of hippocampal dentate gyrus from adult mouse.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

TopHat: discovering splice junctions with RNA-Seq

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Pbx3 is required for normal locomotion and dorsal horn development

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

A manual method for the purification of fluorescently labeled neurons from the mammalian brain

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Discovering motifs in ranked lists of DNA sequences

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Genome-wide atlas of gene expression in the adult mouse brain

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Nonlinear dimensionality reduction by locally linear embedding

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Proliferation and differentiation of progenitor cells throughout the intact adult rat spinal cord.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Accounting for technical noise in single-cell RNA-seq experiments.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

RNA-Seq gene expression estimation with read mapping uncertainty

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Machine learning. Clustering by fast search and find of density peaks.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5480621

Well-Separated Clusters and Optimal Fuzzy Partitions

19 August 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

Kernel density estimation via diffusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

Alternatives to the Median Absolute Deviation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

An effective implementation of the Lin–Kernighan traveling salesman heuristic

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

Functional organization of the hippocampal longitudinal axis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD7038

New GABAergic interneurons supported by myelin-specific T cells are formed in intact adult spinal cord

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27471252

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sectioning of brain tissues

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27471252

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Notes on Continuous Stochastic Phenomena

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27471252

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.AAD7038

1 reference

26 September 2017

1 reference

26 September 2017

1 reference