An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex. (Q34123789)

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16 February 2020

title

An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex (English)

1 reference

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16 February 2020

0 references

0 references

1 reference

3

1 reference

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16 February 2020

Mariko L Bennett

4

1 reference

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16 February 2020

Paolo Guarnieri

8

1 reference

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16 February 2020

Ben Barres

16

1 reference

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16 February 2020

Jian Qian Wu

17

1 reference

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16 February 2020

author name string

Ye Zhang

1

1 reference

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16 February 2020

Kenian Chen

2

1 reference

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16 February 2020

Anja R Scholze

5

1 reference

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16 February 2020

Sean O'Keeffe

6

1 reference

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16 February 2020

Hemali P Phatnani

7

1 reference

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16 February 2020

Christine Caneda

9

1 reference

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16 February 2020

Nadine Ruderisch

10

1 reference

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16 February 2020

Shuyun Deng

11

1 reference

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16 February 2020

Shane A Liddelow

12

1 reference

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16 February 2020

Chaolin Zhang

13

1 reference

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16 February 2020

Richard Daneman

14

1 reference

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16 February 2020

Tom Maniatis

15

1 reference

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16 February 2020

language of work or name

English

0 references

publication date

1 September 2014

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16 February 2020

published in

Journal of Neuroscience

1 reference

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16 February 2020

volume

34

1 reference

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16 February 2020

page(s)

11929-11947

1 reference

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16 February 2020

issue

36

1 reference

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Unraveling the complex metabolic nature of astrocytes

16 February 2020

cites work

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A neurodegeneration-specific gene-expression signature of acutely isolated microglia from an amyotrophic lateral sclerosis mouse model

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Comparative analyses of Purkinje cell gene expression profiles reveal shared molecular abnormalities in models of different polyglutamine diseases

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LGR6 is a high affinity receptor of R-spondins and potentially functions as a tumor suppressor

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5 July 2018

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5 July 2018

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Gene expression profiling of neural stem cells and their neuronal progeny reveals IGF2 as a regulator of adult hippocampal neurogenesis

5 July 2018

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Isoform diversity and regulation in peripheral and central neurons revealed through RNA-Seq

5 July 2018

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Comprehensive qPCR profiling of gene expression in single neuronal cells

5 July 2018

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Brain energy metabolism: focus on astrocyte-neuron metabolic cooperation

5 July 2018

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5 July 2018

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Development of a method for the purification and culture of rodent astrocytes

5 July 2018

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QKI-mediated alternative splicing of the histone variant MacroH2A1 regulates cancer cell proliferation

5 July 2018

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A role for glia in the progression of Rett's syndrome

5 July 2018

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The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain

5 July 2018

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Improving RNA-Seq expression estimates by correcting for fragment bias

5 July 2018

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SGCE isoform characterization and expression in human brain: implications for myoclonus-dystonia pathogenesis?

5 July 2018

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Astrocytes: implications for neuroinflammatory pathogenesis of Alzheimer's disease

5 July 2018

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The mouse blood-brain barrier transcriptome: a new resource for understanding the development and function of brain endothelial cells

5 July 2018

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Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls

5 July 2018

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Phosphorylation status of pyruvate dehydrogenase distinguishes metabolic phenotypes of cultured rat brain astrocytes and neurons.

5 July 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

5 July 2018

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Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing

5 July 2018

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E3 ubiquitin ligase APC/C-Cdh1 accounts for the Warburg effect by linking glycolysis to cell proliferation

5 July 2018

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Distinct transcriptomes define rostral and caudal serotonin neurons

5 July 2018

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An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

5 July 2018

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Gabapentin receptor alpha2delta-1 is a neuronal thrombospondin receptor responsible for excitatory CNS synaptogenesis

5 July 2018

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Myelin gene regulatory factor is a critical transcriptional regulator required for CNS myelination

5 July 2018

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Functional and evolutionary insights into human brain development through global transcriptome analysis

5 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

5 July 2018

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Nrf2-mediated neuroprotection in the MPTP mouse model of Parkinson's disease: Critical role for the astrocyte

5 July 2018

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Neuroscience: Glia — more than just brain glue

5 July 2018

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Long non-coding RNAs: insights into functions

5 July 2018

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

5 July 2018

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

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Application of a translational profiling approach for the comparative analysis of CNS cell types

5 July 2018

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Identification of dynamically regulated microRNA and mRNA networks in developing oligodendrocytes

5 July 2018

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

5 July 2018

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Alternative isoform regulation in human tissue transcriptomes

5 July 2018

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A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

5 July 2018

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Glial and neuronal isoforms of Neurofascin have distinct roles in the assembly of nodes of Ranvier in the central nervous system

5 July 2018

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

5 July 2018

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

5 July 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

5 July 2018

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

5 July 2018

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The transcriptional landscape of the yeast genome defined by RNA sequencing

5 July 2018

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A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function

5 July 2018

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Astrocytes expressing ALS-linked mutated SOD1 release factors selectively toxic to motor neurons

5 July 2018

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Functional genomic analysis of oligodendrocyte differentiation.

5 July 2018

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Polysialylated neural cell adhesion molecule is involved in induction of long-term potentiation and memory acquisition and consolidation in a fear-conditioning paradigm.

5 July 2018

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Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

5 July 2018

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Global transcriptome analysis of genetically identified neurons in the adult cortex.

5 July 2018

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AceView: a comprehensive cDNA-supported gene and transcripts annotation

5 July 2018

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In vivo synaptic plasticity in the dentate gyrus of mice deficient in the neural cell adhesion molecule NCAM or its polysialic acid

5 July 2018

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An astrocytic basis of epilepsy

5 July 2018

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Splicing regulates NAD metabolite binding to histone macroH2A.

5 July 2018

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Thrombospondins are astrocyte-secreted proteins that promote CNS synaptogenesis

5 July 2018

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The Vertebrate Genome Annotation (Vega) database

5 July 2018

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Variation in alternative splicing across human tissues

5 July 2018

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Dichloroacetate effects on glucose and lactate oxidation by neurons and astroglia in vitro and on glucose utilization by brain in vivo

5 July 2018

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Microarray data normalization and transformation

5 July 2018

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Genome-wide detection of tissue-specific alternative splicing in the human transcriptome

5 July 2018

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Astroglial contribution to brain energy metabolism in humans revealed by 13C nuclear magnetic resonance spectroscopy: elucidation of the dominant pathway for neurotransmitter glutamate repletion and measurement of astrocytic oxidative metabolism

5 July 2018

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The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia

5 July 2018

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Neural cell adhesion molecule (N-CAM) domains and intracellular signaling pathways involved in the inhibition of astrocyte proliferation

5 July 2018

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Brain lactate is an obligatory aerobic energy substrate for functional recovery after hypoxia: further in vitro validation.

5 July 2018

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The polysialic acid modification of the neural cell adhesion molecule is involved in spatial learning and hippocampal long-term potentiation

5 July 2018

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The onconeural antigen Nova-1 is a neuron-specific RNA-binding protein, the activity of which is inhibited by paraneoplastic antibodies

5 July 2018

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Conversion of Xenopus ectoderm into neurons by NeuroD, a basic helix-loop-helix protein

5 July 2018

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A single protocol to detect transcripts of various types and expression levels in neural tissue and cultured cells: in situ hybridization using digoxigenin-labelled cRNA probes

5 July 2018

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Organization of the neural cell adhesion molecule (N-CAM) gene: alternative exon usage as the basis for different membrane-associated domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

Human M2-type pyruvate kinase: cDNA cloning, chromosomal assignment and expression in hepatoma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

Multiple and novel specificities of monoclonal antibodies O1, O4, and R-mAb used in the analysis of oligodendrocyte development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

Unique transcriptome signature of mouse microglia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

The bioenergetic and antioxidant status of neurons is controlled by continuous degradation of a key glycolytic enzyme by APC/C-Cdh1.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

Alternative splicing controls selective trans-synaptic interactions of the neuroligin-neurexin complex.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

Increased expression of the astrocytic glutamate transporter GLT-1 in the prefrontal cortex of schizophrenics

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

Gene expression nervous system atlas (GENSAT).

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

The bHLH transcription factors OLIG2 and OLIG1 couple neuronal and glial subtype specification.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

Glutamate decreases pyruvate carboxylase activity and spares glucose as energy substrate in cultured cerebellar astrocytes

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

Universal GFP reporter for the study of vascular development.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152602

The metabolism of [3-(13)C]lactate in the rat brain is specific of a pyruvate carboxylase-deprived compartment

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25186741

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The transcriptome and metabolic gene signature of protoplasmic astrocytes in the adult murine cortex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25186741

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Lactate release from cultured astrocytes and neurons: a comparison

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25186741

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1523/JNEUROSCI.1860-14.2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25186741%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25186741%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference