Local versus nonlocal interactions in protein folding and stability--an experimentalist's point of view (Q41394376)

30 September 2017

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title

Local versus nonlocal interactions in protein folding and stability--an experimentalist's point of view (English)

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30 September 2017

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Muñoz V

1

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PubMed ID

9079385

30 September 2017

Serrano L

series ordinal

2

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PubMed ID

9079385

30 September 2017

language of work or name

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1 January 1996

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30 September 2017

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30 September 2017

1

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30 September 2017

R71-7

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30 September 2017

4

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Funnels, pathways, and the energy landscape of protein folding: a synthesis

30 September 2017

1 reference

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7 January 2021

Theoretical studies of protein folding and unfolding

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7 January 2021

Dominant forces in protein folding

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7 January 2021

Experimental and Theoretical Aspects of Protein Folding

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7 January 2021

Nucleation, rapid folding, and globular intrachain regions in proteins

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7 January 2021

Protein-folding dynamics

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7 January 2021

Protein folding dynamics: the diffusion-collision model and experimental data

1 reference

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7 January 2021

Is there a single pathway for the folding of a polypeptide chain?

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Conformation of peptide fragments of proteins in aqueous solution: implications for initiation of protein folding

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Intermediates in the folding reactions of small proteins

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7 January 2021

Peptide conformation and protein folding

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Principles of protein folding--a perspective from simple exact models.

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Impact of local and non-local interactions on thermodynamics and kinetics of protein folding

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Optimal local propensities for model proteins

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications

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7 January 2021

The origins of protein secondary structure. Effects of packing density and hydrogen bonding studied by a fast conformational search

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Local conformational signals and the statistical thermodynamics of collapsed helical proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

The mechanism of alpha-helix formation by peptides

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Stability of alpha-helices

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Helix design, prediction and stability

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Determination of the helix and beta form of proteins in aqueous solution by circular dichroism.

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Empirical Predictions of Protein Conformation

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https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Alpha-helix stability in proteins. II. Factors that influence stability at an internal position

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7 January 2021

Structural basis of amino acid alpha helix propensity

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Thermodynamic beta-sheet propensities measured using a zinc-finger host peptide.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Measurement of the β-sheet-forming propensities of amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Amino-acid substitutions in a surface turn modulate protein stability

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Context is a major determinant of β-sheet propensity

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Context-dependent secondary structure formation of a designed protein sequence

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Empirical evaluation of the influence of side chains on the conformational entropy of the polypeptide backbone.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Empirical correlation for the replacement of Ala by Gly: importance of amino acid secondary intrinsic propensities.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Side-Chain Determinants of .beta.-Sheet Stability

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects

1 reference

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7 January 2021

'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

1 reference

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7 January 2021

Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation

1 reference

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7 January 2021

Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations.

1 reference

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7 January 2021

Toward a Description of the Conformations of Denatured States of Proteins. Comparison of a Random Coil Model with NMR Measurements

1 reference

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7 January 2021

Hydrogen bond strength and beta-sheet propensities: the role of a side chain blocking effect

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Side-chain interactions between sulfur-containing amino acids and phenylalanine in alpha-helices.

1 reference

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7 January 2021

Addition of side chain interactions to modified Lifson-Roig helix-coil theory: application to energetics of phenylalanine-methionine interactions.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Alpha-helix stability in proteins. I. Empirical correlations concerning substitution of side-chains at the N and C-caps and the replacement of alanine by glycine or serine at solvent-exposed surfaces

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

N- and C-capping preferences for all 20 amino acids in alpha-helical peptides

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Alpha helix capping in synthetic model peptides by reciprocal side chain-main chain interactions: evidence for an N terminal "capping box"

1 reference

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7 January 2021

Stabilization of alpha-helical structures in short peptides via end capping

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

The hydrophobic-staple motif and a role for loop-residues in alpha-helix stability and protein folding.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Experimental analysis of the Schellman motif

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Analysis of i,i+5 and i,i+8 hydrophobic interactions in a helical model peptide bearing the hydrophobic staple motif

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Helix stop signals in proteins and peptides: the capping box

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Rules for alpha-helix termination by glycine

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Sequence determinants of the capping box, a stabilizing motif at the N-termini of alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

The role of turns in the structure of an alpha-helical protein.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Local structures in unfolded lysozyme and correlation with secondary structures in the native conformation: helix-forming or -breaking propensity of peptide segments.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Folding of peptide fragments comprising the complete sequence of proteins. Models for initiation of protein folding. I. Myohemerythrin

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Folding of peptide fragments comprising the complete sequence of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

CD and 1H-NMR studies on the conformational properties of peptide fragments from the C-terminal domain of thermolysin.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Local conformations of peptides representing the entire sequence of bovine pancreatic trypsin inhibitor and their roles in folding

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Folding of protein G B1 domain studied by the conformational characterization of fragments comprising its secondary structure elements

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Conformational analysis of peptides corresponding to beta-hairpins and a beta-sheet that represent the entire sequence of the alpha-spectrin SH3 domain.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Search for nucleation sites in smaller fragments of chymotrypsin inhibitor 2.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

The distribution of alpha-helix propensity along the polypeptide chain is not conserved in proteins from the same family

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Structural analysis of peptides encompassing all α-helices of three α/β parallel proteins: Che-Y, flavodoxin and P21-Ras: Implications for α-Helix stability and the folding of α/β parallel proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Kinetic characterization of the chemotactic protein from Escherichia coli, CheY. Kinetic analysis of the inverse hydrophobic effect.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Evidence for a two-state transition in the folding process of the activation domain of human procarboxypeptidase A2.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a two-state folding transition.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2896%2900036-3

7 January 2021

10.1016/S1359-0278(96)00036-3

Identifiers

DOI

1 reference

30 September 2017

1 reference

PubMed ID

9079385