EpiExplorer: live exploration and global analysis of large epigenomic datasets (Q41430723)

30 September 2017

EpiExplorer: live exploration and global analysis of large epigenomic datasets (English)

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30 September 2017

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5

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30 September 2017

4

Thomas Lengauer

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30 September 2017

2

Hannah Bast

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30 September 2017

Konstantin Halachev

1

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30 September 2017

Felipe Albrecht

series ordinal

3

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30 September 2017

language of work or name

English

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publication date

3 October 2012

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30 September 2017

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30 September 2017

13

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10

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30 September 2017

R96

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https://scigraph.springernature.com/pub.10.1186/gb-2012-13-10-r96

30 September 2017

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cites work

The Human Epigenome Browser at Washington University

1 reference

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Cistrome: an integrative platform for transcriptional regulation studies

1 October 2017

1 reference

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Ensembl BioMarts: a hub for data retrieval across taxonomic space

1 October 2017

1 reference

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Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells

1 October 2017

1 reference

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5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells

1 October 2017

1 reference

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5-Hydroxymethylcytosine, the sixth base of the genome

1 October 2017

1 reference

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Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

CpG islands and the regulation of transcription

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Mapping and analysis of chromatin state dynamics in nine human cell types

1 October 2017

1 reference

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The Genomic HyperBrowser: inferential genomics at the sequence level

1 October 2017

1 reference

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TET genes: new players in DNA demethylation and important determinants for stemness

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

EpiChIP: gene-by-gene quantification of epigenetic modification levels

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

ENCODE whole-genome data in the UCSC genome browser (2011 update)

1 October 2017

1 reference

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The NIH Roadmap Epigenomics Mapping Consortium

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Tackling the epigenome: challenges and opportunities for collaboration

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Comparative epigenomic analysis of murine and human adipogenesis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Quantitative comparison of genome-wide DNA methylation mapping technologies.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

DNA methylation and cellular reprogramming

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Next-generation genomics: an integrative approach

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

GREAT improves functional interpretation of cis-regulatory regions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

BEDTools: a flexible suite of utilities for comparing genomic features

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Mutation in TET2 in myeloid cancers

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Histone modifications at human enhancers reflect global cell-type-specific gene expression

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

The UCSC Genome Browser Database: 2008 update

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

CpG island mapping by epigenome prediction

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Chromatin modifications and their function

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Taverna: a tool for building and running workflows of services

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

The ENCODE (ENCyclopedia Of DNA Elements) Project

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Bioconductor: open software development for computational biology and bioinformatics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

EnsMart: a generic system for fast and flexible access to biological data

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

The UCSC Table Browser data retrieval tool

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Gene ontology: tool for the unification of biology

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

Globin gene regulation and switching: circa 1990.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

BLUEPRINT to decode the epigenetic signature written in blood.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

DNA-binding factors shape the mouse methylome at distal regulatory regions

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3491424

A user's guide to the encyclopedia of DNA elements (ENCODE)

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-10-R96

10.1186/GB-2012-13-10-R96

21 January 2018

Identifiers

DOI

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Dimensions Publication ID

30 September 2017

1013406346

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Fatcat ID

release_dweegccdeveafmccvgbwtq7qaq

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Fatcat

https://api.fatcat.wiki/v0/release/dweegccdeveafmccvgbwtq7qaq

mapped directly with Wikidata item

24 November 2022

based on heuristic

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30 September 2017

1 reference