Precision annotation of digital samples in NCBI's gene expression omnibus (Q41678419)

7 October 2017

Precision annotation of digital samples in NCBI's gene expression omnibus (English)

1 reference

7 October 2017

Gene Expression Omnibus

1 reference

inferred from title

author

Daniel S. Himmelstein

14

1 reference

7 October 2017

Dvir Aran

12

0 references

Jordan Spatz

Jordan Spatz

13

0 references

Marina Sirota

Marina Sirota

17

0 references

Mark A. Musen

Mark A Musen

18

0 references

Dexter Hadley

1

Dexter Hadley

1 reference

7 October 2017

19

Atul J Butte

1 reference

7 October 2017

Tej D Azad

6

0 references

Bin Chen

10

Bin Chen

1 reference

7 October 2017

Sanchita Bhattacharyaa

16

Sanchita Bhattacharya

1 reference

7 October 2017

15

Maryam Panahiazar

1 reference

7 October 2017

James Pan

2

1 reference

7 October 2017

Osama El-Sayed

3

1 reference

7 October 2017

Jihad Aljabban

4

1 reference

7 October 2017

Imad Aljabban

5

1 reference

7 October 2017

Mohamad O Hadied

7

1 reference

7 October 2017

Shuaib Raza

8

1 reference

7 October 2017

Benjamin Abhishek Rayikanti

9

1 reference

7 October 2017

Hyojung Paik

11

1 reference

7 October 2017

19 September 2017

1 reference

7 October 2017

1 reference

7 October 2017

4

1 reference

7 October 2017

170125

1 reference

Creative Commons Attribution 4.0 International

7 October 2017

start time

19 September 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

The FAIR Guiding Principles for scientific data management and stewardship

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

A comprehensive time-course-based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

The impact of the metabotropic glutamate receptor and other gene family interaction networks on autism

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

ImmPort: disseminating data to the public for the future of immunology

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

PCSK9: From discovery to therapeutic applications

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Integrating multiple 'omics' analyses identifies serological protein biomarkers for preeclampsia

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

The Cancer Genome Atlas Pan-Cancer analysis project

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Genomic medicine, precision medicine, personalized medicine: what's in a name?

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Peptidomic Identification of Serum Peptides Diagnosing Preeclampsia

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

ArrayExpress update--trends in database growth and links to data analysis tools

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

NCBI GEO: archive for functional genomics data sets--update

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Promise of personalized omics to precision medicine

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

BioGPS and MyGene.info: organizing online, gene-centric information

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Cross-species functional analysis of cancer-associated fibroblasts identifies a critical role for CLCF1 and IL-6 in non-small cell lung cancer in vivo.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

A population approach to precision medicine

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Deep phenotyping for precision medicine

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Effect of a monoclonal antibody to PCSK9 on LDL cholesterol

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

A novel significance score for gene selection and ranking.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Genome-wide copy number variation study associates metabotropic glutamate receptor gene networks with attention deficit hyperactivity disorder

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Disease Ontology: a backbone for disease semantic integration

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Computational prediction and experimental validation associating FABP-1 and pancreatic adenocarcinoma with diabetes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Protein microarrays discover angiotensinogen and PRKRIP1 as novel targets for autoantibodies in chronic renal disease

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Entrez Gene: gene-centered information at NCBI

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

NCBI GEO: archive for functional genomics data sets--10 years on

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Modeling sample variables with an Experimental Factor Ontology

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

BioPortal: ontologies and integrated data resources at the click of a mouse

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

NCBI GEO: archive for high-throughput functional genomic data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

The NCBI dbGaP database of genotypes and phenotypes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Understanding interobserver agreement: the kappa statistic

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

The kappa statistic in reliability studies: use, interpretation, and sample size requirements.

6 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

6 June 2018

https://api.crossref.org/works/10.1038%2FSDATA.2017.125

7 January 2021

inferred from DOI database lookup

Low LDL cholesterol in individuals of African descent resulting from frequent nonsense mutations in PCSK9.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Mutations in PCSK9 cause autosomal dominant hypercholesterolemia

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Meta-analysis in clinical trials

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Gains in accuracy from replicated readings of diagnostic images: prediction and assessment in terms of ROC analysis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

The Measurement of Observer Agreement for Categorical Data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Improving Performance by Multiple Interpretations of Chest Radiographs: Effectiveness and Cost

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Making it personal: translational bioinformatics

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Personal genomes and precision medicine

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Combining multiple microarray studies and modeling interstudy variation.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Assessing rater performance without a "gold standard" using consensus theory.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604135

Preparing for Precision Medicine

18 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.125

Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.125

How many raters? Toward the most reliable diagnostic consensus

21 January 2018

2 references

https://api.crossref.org/works/10.1038%2FSDATA.2017.125

7 January 2021

inferred from DOI database lookup

PubMed

https://pubmed.ncbi.nlm.nih.gov/28925997

12 December 2020

inferred from PubMed ID database lookup

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.125

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/SDATA.2017.125

1 reference

Dimensions Publication ID

7 October 2017

0 references

1 reference

7 October 2017

PubMed publication ID

28925997

1 reference