GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes (Q41764949)

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scientific article published on 25 October 2013

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English	GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes	scientific article published on 25 October 2013

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scholarly article

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28 February 2020

GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes (English)

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28 February 2020

Bacillus subtilis

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7

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28 February 2020

author name string

Allison Kriel

1

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28 February 2020

Shaun R Brinsmade

2

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28 February 2020

Jessica L Tse

3

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28 February 2020

Ashley K Tehranchi

4

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28 February 2020

Alycia N Bittner

5

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28 February 2020

Abraham L Sonenshein

6

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28 February 2020

publication date

25 October 2013

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28 February 2020

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13

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Journal of Bacteriology

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28 February 2020

196

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28 February 2020

1

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28 February 2020

189-201

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28 February 2020

Genome-wide identification of Bacillus subtilis CodY-binding sites at single-nucleotide resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Direct regulation of GTP homeostasis by (p)ppGpp: a critical component of viability and stress resistance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Dissecting complex metabolic integration provides direct genetic evidence for CodY activation by guanine nucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

CDD: a Conserved Domain Database for the functional annotation of proteins

1 reference

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6 June 2018

Regulation of CodY Activity through Modulation of Intracellular Branched-Chain Amino Acid Pools

1 reference

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6 June 2018

Heavy involvement of stringent transcription control depending on the adenine or guanine species of the transcription initiation site in glucose and pyruvate metabolism in Bacillus subtilis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies

1 reference

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6 June 2018

Molecular mechanisms underlying the positive stringent response of the Bacillus subtilis ilv-leu operon, involved in the biosynthesis of branched-chain amino acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

(p)ppGpp: still magical?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Interaction of Bacillus subtilis CodY with GTP.

1 reference

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6 June 2018

Nutritional control of elongation of DNA replication by (p)ppGpp

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

TRANSFORMATION OF BIOCHEMICALLY DEFICIENT STRAINS OF BACILLUS SUBTILIS BY DEOXYRIBONUCLEATE.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Routine markerless gene replacement in Bacillus anthracis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

DksA potentiates direct activation of amino acid promoters by ppGpp

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Java Treeview--extensible visualization of microarray data

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6 June 2018

Open source clustering software

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6 June 2018

Essential Bacillus subtilis genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Bacillus subtilis CodY represses early-stationary-phase genes by sensing GTP levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Significance analysis of microarrays applied to the ionizing radiation response

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6 June 2018

Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

A vector for systematic gene inactivation in Bacillus subtilis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Cluster analysis and display of genome-wide expression patterns

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3911124

6 June 2018

Cloning and characterization of a relA/spoT homologue from Bacillus subtilis

1 reference

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6 June 2018

Compilation and analysus ofBacillus SubtilisσA-dependent promoter sequences: evidence for extended contact between RNA polymerse and upstream promoter DNA

1 reference

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6 June 2018

Enzyme changes during Bacillus subtilis sporulation caused by deprivation of guanine nucleotides

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6 June 2018

Catabolic repression of bacterial sporulation

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6 June 2018

Cloning and characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis.

1 reference

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6 June 2018

The transcription factor DksA prevents conflicts between DNA replication and transcription machinery

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18 August 2018

Identification and functional analysis of novel (p)ppGpp synthetase genes in Bacillus subtilis

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18 August 2018

rRNA promoter regulation by nonoptimal binding of sigma region 1.2: an additional recognition element for RNA polymerase.

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18 August 2018

Conformational antagonism between opposing active sites in a bifunctional RelA/SpoT homolog modulates (p)ppGpp metabolism during the stringent response [corrected].

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18 August 2018

Isolation of RNA polymerase suppressors of a (p)ppGpp deficiency

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18 August 2018

DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP

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12 December 2020

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Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations

1 reference

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12 December 2020

based on heuristic

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The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation in Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/24163341

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Properties of Bacillus subtilis 168 derivatives freed of their natural prophages

1 reference

https://pubmed.ncbi.nlm.nih.gov/24163341

12 December 2020

based on heuristic

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Sporulation and regulation of homoserine dehydrogenase in Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/24163341

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.00918-13

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28 February 2020

PMC publication ID

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Europe PubMed Central

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28 February 2020

PubMed publication ID

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28 February 2020

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