Statistical calibration of the SEQUEST XCorr function (Q41830797)

12 October 2017

Statistical calibration of the SEQUEST XCorr function (English)

1 reference

12 October 2017

0 references

3

William Stafford Noble

1 reference

12 October 2017

Aaron A Klammer

1

1 reference

PMC publication ID

2807930

12 October 2017

Christopher Y Park

series ordinal

2

1 reference

12 October 2017

1 April 2009

1 reference

Journal of Proteome Research

12 October 2017

1 reference

12 October 2017

8

1 reference

12 October 2017

4

1 reference

12 October 2017

2106-2113

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

12 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Calibrating E-values for MS2 database search methods

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Statistical model for large-scale peptide identification in databases from tandem mass spectra using SEQUEST.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Open mass spectrometry search algorithm

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

TANDEM: matching proteins with tandem mass spectra

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Statistical significance for genomewide studies

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Empirical statistical estimates for sequence similarity searches.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Rapid and accurate peptide identification from tandem mass spectra

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Estimating the statistical significance of peptide identifications from shotgun proteomics experiments.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807930

2 December 2018

Identifiers

DOI

10.1021/PR8011107

1 reference

12 October 2017

1 reference

PMC publication ID

2807930

12 October 2017

PubMed publication ID

19275164

1 reference

PMC publication ID

2807930