Rapid and accurate peptide identification from tandem mass spectra (Q43147563)

14 November 2017

Rapid and accurate peptide identification from tandem mass spectra (English)

1 reference

14 November 2017

3

1 reference

14 November 2017

4

Michael J MacCoss

1 reference

14 November 2017

Christopher Y Park

1

1 reference

PMCID

2667385

14 November 2017

Aaron A Klammer

series ordinal

2

1 reference

PMCID

2667385

14 November 2017

William S Noble

series ordinal

5

1 reference

14 November 2017

28 May 2008

1 reference

Journal of Proteome Research

14 November 2017

1 reference

14 November 2017

7

1 reference

14 November 2017

7

1 reference

14 November 2017

3022-3027

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

14 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Statistical calibration of the SEQUEST XCorr function

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

What is a support vector machine?

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

A fast coarse filtering method for peptide identification by mass spectrometry.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Effects of modified digestion schemes on the identification of proteins from complex mixtures

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

TANDEM: matching proteins with tandem mass spectra

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

OLAV: towards high-throughput tandem mass spectrometry data identification

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Statistical significance for genomewide studies

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Probability-based protein identification by searching sequence databases using mass spectrometry data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Computational prediction of proteotypic peptides for quantitative proteomics.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Intensity-based protein identification by machine learning from a library of tandem mass spectra.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

Qscore: an algorithm for evaluating SEQUEST database search results

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667385

15 August 2018

Identifiers

DOI

10.1021/PR800127Y

1 reference

14 November 2017

1 reference

14 November 2017

1 reference

PMCID

2667385