TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations (Q41862274)

13 October 2017

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations (English)

1 reference

13 October 2017

1 reference

2

1 reference

13 October 2017

Federico Abascal

1

1 reference

PMC publication ID

2896173

13 October 2017

Maximilian J Telford

series ordinal

3

1 reference

13 October 2017

30 April 2010

1 reference

13 October 2017

Nucleic Acids Research

1 reference

13 October 2017

38

1 reference

13 October 2017

Web Server issue

1 reference

13 October 2017

W7-13

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

13 October 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The phylogenetic informativeness of nucleotide and amino acid sequences for reconstructing the vertebrate tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

Parallel evolution of the genetic code in arthropod mitochondrial genomes.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

An algorithm for progressive multiple alignment of sequences with insertions

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

MAFFT version 5: improvement in accuracy of multiple sequence alignment

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

The Jalview Java alignment editor

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

T-Coffee: A novel method for fast and accurate multiple sequence alignment

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

EMBOSS: the European Molecular Biology Open Software Suite

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

MODELTEST: testing the model of DNA substitution

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

Relative character-state space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896173

Amino acid vs. nucleotide characters: challenging preconceived notions

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20435676

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ291

1 reference

13 October 2017

journals/nar/AbascalZT10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

2896173

13 October 2017

PubMed publication ID

20435676

1 reference

PMC publication ID

2896173