Evidence for a base triple in the free HIV-1 TAR RNA. (Q42068689)

16 October 2017

Evidence for a base triple in the free HIV-1 TAR RNA. (English)

1 reference

16 October 2017

Hendrik Huthoff

1

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16 October 2017

Frederic Girard

series ordinal

2

1 reference

16 October 2017

Sybren S Wijmenga

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3

1 reference

16 October 2017

Ben Berkhout

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4

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16 October 2017

language of work or name

English

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publication date

1 March 2004

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16 October 2017

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16 October 2017

10

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16 October 2017

3

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16 October 2017

412-423

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describes a project that uses

16 October 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1370937/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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A functional genetic approach suggests a novel interaction between the human immunodeficiency virus type 1 (HIV-1) Tat protein and HIV-1 TAR RNA in vivo

5 June 2018

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The bulge region of HIV-1 TAR RNA binds metal ions in solution.

5 June 2018

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TAR RNA loop: a scaffold for the assembly of a regulatory switch in HIV replication

5 June 2018

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Two alternating structures of the HIV-1 leader RNA

5 June 2018

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Molecular dynamics studies of the HIV-1 TAR and its complex with argininamide

5 June 2018

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Coupled nucleotide covariations reveal dynamic RNA interaction patterns

5 June 2018

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Functional differences between the long terminal repeat transcriptional promoters of human immunodeficiency virus type 1 subtypes A through G.

5 June 2018

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Detection of N-H...N hydrogen bonding in RNA via scalar couplings in the absence of observable imino proton resonances

5 June 2018

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Recognition of 5'-terminal TAR structure in human immunodeficiency virus-1 mRNA by eukaryotic translation initiation factor 2.

5 June 2018

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Identity and geometry of a base triple in 16S rRNA determined by comparative sequence analysis and molecular modeling

5 June 2018

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Recruitment of cyclin T1/P-TEFb to an HIV type 1 long terminal repeat promoter proximal RNA target is both necessary and sufficient for full activation of transcription

5 June 2018

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

5 June 2018

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Visualizing tertiary folding of RNA and RNA-protein interactions by a tethered iron chelate: analysis ofHIV-1 Tat-TAR complex

5 June 2018

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A hairpin structure in the R region of the human immunodeficiency virus type 1 RNA genome is instrumental in polyadenylation site selection

5 June 2018

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A 1.3-A resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation

5 June 2018

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NMR evidence for a base triple in the HIV-2 TAR C-G.C+ mutant-argininamide complex

5 June 2018

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A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA

5 June 2018

1 reference

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Determination of the minimal amount of Tat activity required for human immunodeficiency virus type 1 replication

5 June 2018

1 reference

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Mutagenesis and comparative sequence analysis of a base triple joining the two domains of group I ribozymes

5 June 2018

1 reference

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Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain

5 June 2018

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Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge

5 June 2018

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5 June 2018

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Quantitation of human immunodeficiency virus type 1 infection kinetics

5 June 2018

1 reference

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Modeling and solution structure probing of the HIV-1 TAR stem-loop

5 June 2018

1 reference

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Role of RNA structure in arginine recognition of TAR RNA.

5 June 2018

1 reference

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The bend in RNA created by the trans-activation response element bulge of human immunodeficiency virus is straightened by arginine and by Tat-derived peptide

5 June 2018

1 reference

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The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein

5 June 2018

1 reference

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HIV-1 tat trans-activation requires the loop sequence within tar.

5 June 2018

1 reference

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The trans-activator gene of HTLV-III is essential for virus replication

5 June 2018

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Tat trans-activates the human immunodeficiency virus through a nascent RNA target

5 June 2018

1 reference

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Human immunodeficiency virus 1 tat protein binds trans-activation-responsive region (TAR) RNA in vitro

5 June 2018

1 reference

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On finding all suboptimal foldings of an RNA molecule

5 June 2018

1 reference

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HIV-1 tat protein stimulates transcription by binding to a U-rich bulge in the stem of the TAR RNA structure

5 June 2018

1 reference

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Fragments of the HIV-1 Tat protein specifically bind TAR RNA.

5 June 2018

1 reference

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Detailed mutational analysis of TAR RNA: critical spacing between the bulge and loop recognition domains

5 June 2018

1 reference

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RNA recognition by Tat-derived peptides: interaction in the major groove?

5 June 2018

1 reference

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Critical chemical features in trans-acting-responsive RNA are required for interaction with human immunodeficiency virus type 1 Tat protein

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

HIV-1 Tat protein promotes formation of more-processive elongation complexes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Unusual structure of the human immunodeficiency virus type 1 trans-activation response element

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Arginine-mediated RNA recognition: the arginine fork.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Conserved nucleotides in the TAR RNA stem of human immunodeficiency virus type 1 are critical for Tat binding and trans activation: model for TAR RNA tertiary structure

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Specific binding of arginine to TAR RNA

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

RNA binding assays for Tat-derived peptides: implications for specificity

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Specific HIV-1 TAR RNA loop sequence and functional groups are required for human cyclin T1-Tat-TAR ternary complex formation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

HIV-1 nucleocapsid protein zinc finger structures induce tRNA(Lys,3) structural changes but are not critical for primer/template annealing

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

HIV-1 auxiliary proteins: making connections in a dying cell

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

High affinity binding of TAR RNA by the human immunodeficiency virus type-1 tat protein requires base-pairs in the RNA stem and amino acid residues flanking the basic region

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

An NMR study of the HIV-1 TAR element hairpin

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Identification of base-triples in RNA using comparative sequence analysis.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Regulation of mRNA accumulation by a human immunodeficiency virus trans-activator protein

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370937

Characterization of the solution conformations of unbound and Tat peptide-bound forms of HIV-1 TAR RNA

17 August 2018

1 reference

12 December 2020

Proximity of a Tat peptide to the HIV-1 TAR RNA loop region determined by site-specific photo-cross-linking

1 reference

12 December 2020

A bulge structure in HIV-1 TAR RNA is required for Tat binding and Tat-mediated trans-activation

1 reference

12 December 2020

Analysis of (1)H chemical shifts in DNA: Assessment of the reliability of (1)H chemical shift calculations for use in structure refinement

1 reference

12 December 2020

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

1 reference

12 December 2020

Refolded HIV-1 tat protein protects both bulge and loop nucleotides in TAR RNA from ribonucleolytic cleavage

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.5161304

1 reference

16 October 2017

1 reference

16 October 2017

PubMed publication ID

14970387

1 reference