HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection (Q42077627)

16 October 2017

HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection (English)

1 reference

16 October 2017

0 references

Pere Puigbò

1

1 reference

16 October 2017

Antoni Romeu

series ordinal

2

1 reference

16 October 2017

Santiago Garcia-Vallvé

series ordinal

3

1 reference

16 October 2017

11 October 2007

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16 October 2017

Nucleic Acids Research

1 reference

16 October 2017

36

1 reference

16 October 2017

Database issue

1 reference

16 October 2017

D524-7

1 reference

OPTIMIZER: a web server for optimizing the codon usage of DNA sequences

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

The Pathway Tools cellular overview diagram and Omics Viewer

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Variation in the strength of selected codon usage bias among bacteria

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Relationship between codon biased genes, microarray expression values and physiological characteristics of Streptococcus pneumoniae.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Comparative analysis of gene expression among low G+C gram-positive genomes.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Codon usage between genomes is constrained by genome-wide mutational processes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Predicting gene expression levels from codon biases in alpha-proteobacterial genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Use and misuse of correspondence analysis in codon usage studies

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Characterizations of highly expressed genes of four fast-growing bacteria

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Horizontal gene transfer in bacterial and archaeal complete genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Predicted highly expressed genes of diverse prokaryotic genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Codon usage: mutational bias, translational selection, or both?

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

The 'effective number of codons' used in a gene

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Predicting gene expression level from codon usage bias.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Predicted highly expressed genes in Nocardia farcinica and the implication for its primary metabolism and nocardial virulence

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Codon bias signatures, organization of microorganisms in codon space, and lifestyle

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Codon adaptation index as a measure of dominating codon bias.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Synonymous codon usage in Pseudomonas aeruginosa PA01.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238906

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17933767

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM831

1 reference

16 October 2017

journals/nar/PuigboRG08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 October 2017

PubMed publication ID

17933767

1 reference