Chromatin accessibility underlies synthetic lethality of SWI/SNF subunits in ARID1A-mutant cancers (Q42378723)

28 October 2017

Chromatin accessibility underlies synthetic lethality of SWI/SNF subunits in ARID1A-mutant cancers (English)

1 reference

28 October 2017

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28967863%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Chris Benner

5

1 reference

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1 June 2020

Diana Hargreaves

6

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1 June 2020

author name string

Devin K Porter

2

1 reference

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1 June 2020

Maria Luisa Amaral

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28967863%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Maxim N Shokhirev

4

1 reference

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1 June 2020

language of work or name

English

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publication date

2 October 2017

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28 October 2017

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1 June 2020

volume

6

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describes a project that uses

1 June 2020

edgeR

object named as

edgeR

edgeR package

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Down-regulation of ARID1A is sufficient to initiate neoplastic transformation along with epigenetic reprogramming in non-tumorigenic endometriotic cells

1 reference

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The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers

28 May 2018

1 reference

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ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice.

28 May 2018

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Dynamics of BAF-Polycomb complex opposition on heterochromatin in normal and oncogenic states

28 May 2018

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Smarca4 ATPase mutations disrupt direct eviction of PRC1 from chromatin

28 May 2018

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Loss of HDAC-Mediated Repression and Gain of NF-κB Activation Underlie Cytokine Induction in ARID1A- and PIK3CA-Mutation-Driven Ovarian Cancer

28 May 2018

1 reference

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GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler

28 May 2018

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Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells

28 May 2018

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28 May 2018

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Genome-Wide Transcriptional Regulation Mediated by Biochemically Distinct SWI/SNF Complexes

28 May 2018

1 reference

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c-MET expression in colorectal adenomas and primary carcinomas with its corresponding metastases

28 May 2018

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A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63

28 May 2018

1 reference

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The chromatin remodeler Brg1 activates enhancer repertoires to establish B cell identity and modulate cell growth.

28 May 2018

1 reference

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Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Coexistent ARID1A-PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

c-Met targeting enhances the effect of irradiation and chemical agents against malignant colon cells harboring a KRAS mutation

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Non-coding RNA derived from the region adjacent to the human HO-1 E2 enhancer selectively regulates HO-1 gene induction by modulating Pol II binding

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Predictive and prognostic biomarkers with therapeutic targets in advanced colorectal cancer.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

ARID1B is a specific vulnerability in ARID1A-mutant cancers.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

HIF1A employs CDK8-mediator to stimulate RNAPII elongation in response to hypoxia

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

BAF complexes facilitate decatenation of DNA by topoisomerase IIα

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Enhancer transcripts mark active estrogen receptor binding sites

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Master transcription factors and mediator establish super-enhancers at key cell identity genes

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Integrated genomic analyses identify ARID1A and ARID1B alterations in the childhood cancer neuroblastoma

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

ARID1a-DNA interactions are required for promoter occupancy by SWI/SNF

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

STAR: ultrafast universal RNA-seq aligner

28 May 2018

1 reference

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Comprehensive molecular characterization of human colon and rectal cancer

28 May 2018

1 reference

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Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

A public genome-scale lentiviral expression library of human ORFs

28 May 2018

1 reference

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Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Histone acetylation by CBP and p300 at double-strand break sites facilitates SWI/SNF chromatin remodeling and the recruitment of non-homologous end joining factors.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

A unique chromatin signature uncovers early developmental enhancers in humans

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

COT drives resistance to RAF inhibition through MAP kinase pathway reactivation

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Histone H3K27ac separates active from poised enhancers and predicts developmental state

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

ARID1A mutations in endometriosis-associated ovarian carcinomas

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

(-)-Epigallocatechin-3-gallate inhibits Met signaling, proliferation, and invasiveness in human colon cancer cells

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Interaction of the glucocorticoid receptor with the chromatin landscape

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Quantification of MET and hepatocyte growth factor/scatter factor expression in colorectal adenomas, carcinomas and non-neoplastic epithelia by quantitative laser scanning microscopy

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Distinct mammalian SWI/SNF chromatin remodeling complexes with opposing roles in cell-cycle control

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Nomenclature of the ARID family of DNA-binding proteins

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

DNA-binding properties of ARID family proteins

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

The DNA-binding properties of the ARID-containing subunits of yeast and mammalian SWI/SNF complexes

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

A role for cofactor-cofactor and cofactor-histone interactions in targeting p300, SWI/SNF and Mediator for transcription

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Requirement of Stat3 signaling for HGF/SF-Met mediated tumorigenesis

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Identification of SWI.SNF complex subunit BAF60a as a determinant of the transactivation potential of Fos/Jun dimers

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Transcriptional activation of the hepatocyte growth factor receptor (c-met) gene by its ligand (hepatocyte growth factor) is mediated through AP-1.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Rapid and selective remodeling of a positioned nucleosome during the induction of IL-12 p40 transcription

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Nucleosome mobilization catalysed by the yeast SWI/SNF complex

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Induction of epithelial tubules by growth factor HGF depends on the STAT pathway

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Purification and biochemical heterogeneity of the mammalian SWI-SNF complex

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Facilitated binding of TATA-binding protein to nucleosomal DNA

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

ATP-dependent nucleosome reconfiguration and transcriptional activation from preassembled chromatin templates

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

A multifunctional docking site mediates signaling and transformation by the hepatocyte growth factor/scatter factor receptor family

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643100

Immunoblot analysis of c-Met expression in human colorectal cancer: overexpression is associated with advanced stage cancer

28 May 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28967863

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.30506

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28967863%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28967863%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PubMed publication ID

28967863

1 reference