DRIMM-Synteny: decomposing genomes into evolutionary conserved segments (Q42673261)

4 November 2017

DRIMM-Synteny: decomposing genomes into evolutionary conserved segments (English)

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4 November 2017

2

Pavel A Pevzner

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4 November 2017

Son K Pham

1

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PubMed ID

20736338

4 November 2017

language of work or name

English

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publication date

24 August 2010

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4 November 2017

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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4 November 2017

26

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4 November 2017

20

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4 November 2017

2509-2516

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Breakpoint graphs and ancestral genome reconstructions

4 November 2017

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Segmental duplications: organization and impact within the current human genome project assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Automated de novo protein sequencing of monoclonal antibodies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Automated de novo identification of repeat sequence families in sequenced genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Extensive duplication and reshuffling in the Arabidopsis genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse, and rat genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Glocal alignment: finding rearrangements during alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

ALLPATHS: de novo assembly of whole-genome shotgun microreads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Fast identification and statistical evaluation of segmental homologies in comparative maps.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Short read fragment assembly of bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Widespread genome duplications throughout the history of flowering plants

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Mauve: multiple alignment of conserved genomic sequence with rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Parametric alignment of Drosophila genomes

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

MSOAR: a high-throughput ortholog assignment system based on genome rearrangement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

DAGchainer: a tool for mining segmental genome duplications and synteny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Statistical detection of chromosomal homology using shared-gene density alone

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

The Ensembl genome database project

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Reconstructing contiguous regions of an ancestral genome

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Genome sequencing and analysis of Aspergillus oryzae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Gene-interleaving patterns of synteny in the Saccharomyces cerevisiae genome: are they proof of an ancient genome duplication event?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

De novo repeat classification and fragment assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Genome rearrangements in mammalian evolution: lessons from human and mouse genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

A novel method for multiple alignment of sequences with repeated and shuffled elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Gene and genome duplication

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Yeast genome evolution in the post-genome era.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

SyMAP: A system for discovering and viewing syntenic regions of FPC maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

An integrative method for accurate comparative genome mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Tetraodon genome confirms Takifugu findings: most fish are ancient polyploids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

The origins of genomic duplications in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Yesterday's polyploids and the mystery of diploidization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

GRIL: genome rearrangement and inversion locator

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTQ465

10.1093/BIOINFORMATICS/BTQ465

21 January 2018

Identifiers

DOI

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journals/bioinformatics/PhamP10

4 November 2017

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DBLP Dataset 2021-01-02

28 January 2021

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PubMed ID

20736338