Wrestling with the repertoire: the promise and perils of next generation sequencing for antigen receptors (Q42674575)

4 November 2017

Wrestling with the repertoire: the promise and perils of next generation sequencing for antigen receptors (English)

1 reference

4 November 2017

David A Price

3

0 references

author name string

Paul D Baum

series ordinal

1

1 reference

PubMed ID

23108932

4 November 2017

Vanessa Venturi

series ordinal

2

1 reference

PubMed ID

23108932

4 November 2017

language of work or name

English

0 references

publication date

1 November 2012

1 reference

European Journal of Immunology

4 November 2017

1 reference

4 November 2017

42

1 reference

4 November 2017

11

1 reference

4 November 2017

2834-2839

1 reference

A direct estimate of the human alphabeta T cell receptor diversity

4 November 2017

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

A novel approach to the analysis of specificity, clonality, and frequency of HIV-specific T cell responses reveals a potential mechanism for control of viral escape.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

The influence of age on T cell generation and TCR diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Direct measurement of T-cell receptor repertoire diversity with AmpliCot

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

High-resolution analysis of T-cell receptor beta-chain repertoires using DNA heteroduplex tracking: generally stable, clonal CD8+ expansions in all healthy young adults.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Improvements in repertoire analysis by CDR3 size spectratyping. Bifamily PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

The sizes of the CDR3 hypervariable regions of the murine T-cell receptor beta chains vary as a function of the recombined germ-line segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Overlap and effective size of the human CD8+ T cell receptor repertoire

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

High-throughput sequencing of the zebrafish antibody repertoire

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Performance comparison of benchtop high-throughput sequencing platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Sequence-specific error profile of Illumina sequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Bias in the αβ T-cell repertoire: implications for disease pathogenesis and vaccination

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Large scale loss of data in low-diversity illumina sequencing libraries can be recovered by deferred cluster calling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Profiling model T-cell metagenomes with short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Allelic polymorphism in the T cell receptor and its impact on immune responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Recombinatorial biases and convergent recombination determine interindividual TCRβ sharing in murine thymocytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Rep-Seq: uncovering the immunological repertoire through next-generation sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

TCR clonotypes modulate the protective effect of HLA class I molecules in HIV-1 infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

High-throughput sequencing detects minimal residual disease in acute T lymphoblastic leukemia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FEJI.201242999

21 January 2018

Identifiers

DOI

10.1002/EJI.201242999

1 reference

4 November 2017

1 reference

PubMed ID

23108932