Mutational dynamics of aroid chloroplast genomes (Q42691146)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23204304%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

title

Mutational dynamics of aroid chloroplast genomes (English)

1 reference

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19 February 2020

1

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19 February 2020

Patrick Biggs

2

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19 February 2020

Peter J Matthews

3

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19 February 2020

6

Peter J Lockhart

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19 February 2020

author name string

Lesley J Collins

4

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19 February 2020

Michael D Hendy

5

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19 February 2020

publication date

1 January 2012

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Genome Biology and Evolution

19 February 2020

published in

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19 February 2020

volume

4

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19 February 2020

issue

12

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19 February 2020

page(s)

1316-1323

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The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction

19 February 2020

cites work

1 reference

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Systematic error in seed plant phylogenomics

27 May 2018

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Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny

27 May 2018

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High-throughput sequencing of three Lemnoideae (duckweeds) chloroplast genomes from total DNA

27 May 2018

1 reference

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Clusters of nucleotide substitutions and insertion/deletion mutations are associated with repeat sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III

27 May 2018

1 reference

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Elimination of a group II intron from a plastid gene causes a mutant phenotype

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Regional context in the alignment of biological sequence pairs

27 May 2018

1 reference

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Localized hypermutation and associated gene losses in legume chloroplast genomes

27 May 2018

1 reference

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Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Intraspecific inversions pose a challenge for the trnH-psbA plant DNA barcode

27 May 2018

1 reference

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Tablet--next generation sequence assembly visualization

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

A DNA barcode for land plants

27 May 2018

1 reference

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Circos: an information aesthetic for comparative genomics

27 May 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

27 May 2018

1 reference

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Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

27 May 2018

1 reference

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Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Gene Relocations within Chloroplast Genomes of Jasminum and Menodora (Oleaceae) Are Due to Multiple, Overlapping Inversions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Widespread occurrence of small inversions in the chloroplast genomes of land plants.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

MAFFT version 5: improvement in accuracy of multiple sequence alignment

27 May 2018

1 reference

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The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

DIALIGN: multiple DNA and protein sequence alignment at BiBiServ

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Automatic annotation of organellar genomes with DOGMA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

The complete nucleotide sequence of the hornwort (Anthoceros formosae) chloroplast genome: insight into the earliest land plants

27 May 2018

1 reference

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Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

27 May 2018

1 reference

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REPuter: the manifold applications of repeat analysis on a genomic scale

27 May 2018

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Models of molecular evolution and phylogeny

27 May 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

27 May 2018

1 reference

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Slipped-strand mispairing: a major mechanism for DNA sequence evolution

27 May 2018

1 reference

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An approach to transcriptome analysis of non-model organisms using short-read sequences

27 May 2018

1 reference

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Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes.

16 August 2018

1 reference

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Markers derived from amplified fragment length polymorphism gels for plant ecology and evolution studies

16 August 2018

1 reference

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Phylogeny, Radiation, and Transoceanic Dispersal of New Zealand Alpine Buttercups: Molecular Evidence under Split Decomposition

16 August 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS110

Phylogeny of basal eudicots: Insights from non-coding and rapidly evolving DNA

21 January 2018

1 reference

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Models of Molecular Evolution and Phylogeny: Table 1

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS110

Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS110

Intraspecific cpDNA variations of diploid and tetraploid perennial buckwheat, Fagopyrum cymosum (Polygonaceae)

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3542561

Short inverted repeats function as hotspots of intermolecular recombination giving rise to oligomers of deleted plastid DNAs (ptDNAs)

3 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23204304

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Patterns in spontaneous mutation revealed by human-baboon sequence comparison

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23204304

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genomewide association between insertions/deletions and the nucleotide diversity in bacteria

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23204304

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVS110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23204304%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23204304%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

PubMed publication ID

23204304

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23204304%20AND%20SRC:MED&resulttype=core&format=json