Modelling translation initiation under the influence of sRNA (Q42751615)

6 November 2017

Modelling translation initiation under the influence of sRNA (English)

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6 November 2017

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6 November 2017

3

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6 November 2017

Fabian Amman

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language of work or name

English

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publication date

30 November 2012

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International Journal of Molecular Sciences

6 November 2017

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6 November 2017

13

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6 November 2017

12

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6 November 2017

16223-16240

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Creative Commons Attribution 4.0 International

6 November 2017

start time

30 November 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Global or local? Predicting secondary structure and accessibility in mRNAs

27 May 2018

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ViennaRNA Package 2.0

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Regulation by small RNAs in bacteria: expanding frontiers

27 May 2018

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Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis

27 May 2018

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Hfq and its constellation of RNA

27 May 2018

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RNApredator: fast accessibility-based prediction of sRNA targets

27 May 2018

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Genome-wide detection of novel regulatory RNAs in E. coli

27 May 2018

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In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements

27 May 2018

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Practical Aspects of microRNA Target Prediction

27 May 2018

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27 May 2018

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Comprehensive identification and quantification of microbial transcriptomes by genome-wide unbiased methods

27 May 2018

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Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes

27 May 2018

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Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

27 May 2018

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Computational prediction of sRNAs and their targets in bacteria.

27 May 2018

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The transcription unit architecture of the Escherichia coli genome

27 May 2018

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Activation of gene expression by small RNA.

27 May 2018

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Automated design of synthetic ribosome binding sites to control protein expression

27 May 2018

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Experimental approaches for the discovery and characterization of regulatory small RNA.

27 May 2018

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Fast mapping of short sequences with mismatches, insertions and deletions using index structures

27 May 2018

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Regulatory RNAs in bacteria

27 May 2018

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

27 May 2018

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IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

27 May 2018

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Single-molecule approach to molecular biology in living bacterial cells

27 May 2018

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TargetRNA: a tool for predicting targets of small RNA action in bacteria

27 May 2018

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Variations on RNA folding and alignment: lessons from Benasque.

27 May 2018

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The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Translational control and target recognition by Escherichia coli small RNAs in vivo

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

LrhA regulates rpoS translation in response to the Rcs phosphorelay system in Escherichia coli

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Thermodynamics of RNA-RNA binding

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Effect of RyhB small RNA on global iron use in Escherichia coli

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Initiation of protein synthesis in bacteria

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

The bacterial Sm-like protein Hfq: a key player in RNA transactions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Constitutive Activation of the Escherichia coli Pho Regulon Upregulates rpoS Translation in an Hfq-Dependent Fashion

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

RNA chaperone activity of the Sm-like Hfq protein

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Gene ontology: tool for the unification of biology

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Identification and characterization ofE.coliribosomal binding sites by free energy computation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA)

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Basic local alignment search tool

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Fast accessibility-based prediction of RNA-RNA interactions

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

Local RNA base pairing probabilities in large sequences.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3546686

16 August 2018

Identifiers

DOI

10.3390/IJMS131216223

1 reference

6 November 2017

1 reference

PMC publication ID

3546686

6 November 2017

PubMed publication ID

23203192

1 reference

PMC publication ID

3546686