The distribution of genomic variations in human iPSCs is related to replication-timing reorganization during reprogramming. (Q42792252)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24685138%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

title

The distribution of genomic variations in human iPSCs is related to replication-timing reorganization during reprogramming (English)

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3

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Junjie Lu

1

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author name string

Hu Li

2

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Takayo Sasaki

4

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Anna Baccei

5

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12 March 2020

David M Gilbert

6

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Jun S Liu

7

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James J Collins

8

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Paul H Lerou

9

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publication date

27 March 2014

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12 March 2020

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volume

7

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issue

1

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page(s)

70-78

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The Database of Genomic Variants: a curated collection of structural variation in the human genome.

12 March 2020

cites work

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Genetic and epigenetic variations in iPSCs: potential causes and implications for application

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Intrachromosomal looping is required for activation of endogenous pluripotency genes during reprogramming.

27 May 2018

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27 May 2018

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Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming

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Transcription-replication encounters, consequences and genomic instability

27 May 2018

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27 May 2018

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Differential relationship of DNA replication timing to different forms of human mutation and variation

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27 May 2018

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Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia

27 May 2018

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27 May 2018

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Low incidence of DNA sequence variation in human induced pluripotent stem cells generated by nonintegrating plasmid expression

27 May 2018

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Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage

27 May 2018

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DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes

27 May 2018

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High order chromatin architecture shapes the landscape of chromosomal alterations in cancer

27 May 2018

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Genome sequencing of mouse induced pluripotent stem cells reveals retroelement stability and infrequent DNA rearrangement during reprogramming

27 May 2018

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Chromatin connections to pluripotency and cellular reprogramming

27 May 2018

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27 May 2018

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Somatic coding mutations in human induced pluripotent stem cells

27 May 2018

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Copy number variation and selection during reprogramming to pluripotency

27 May 2018

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Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture

27 May 2018

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Space and time in the nucleus: developmental control of replication timing and chromosome architecture

27 May 2018

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Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

27 May 2018

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Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

27 May 2018

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27 May 2018

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27 May 2018

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27 May 2018

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27 May 2018

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ATM signaling facilitates repair of DNA double-strand breaks associated with heterochromatin

27 May 2018

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27 May 2018

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27 May 2018

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Global chromatin compaction limits the strength of the DNA damage response

27 May 2018

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Replication fork barriers: pausing for a break or stalling for time?

27 May 2018

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Amplicons on human chromosome 11q are located in the early/late-switch regions of replication timing

27 May 2018

1 reference

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Dynamics of DNA replication factories in living cells

27 May 2018

1 reference

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Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency.

27 May 2018

1 reference

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Chromatin organization is a major influence on regional mutation rates in human cancer cells.

16 August 2018

1 reference

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Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: disease-related genes in timing-switch regions

16 August 2018

1 reference

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Identification and Classification of Chromosomal Aberrations in Human Induced Pluripotent Stem Cells

16 August 2018

1 reference

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DNA repair in the context of chromatin: new molecular insights by the nanoscale detection of DNA repair complexes using transmission electron microscopy

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24685138

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Recurrent copy number variations in human induced pluripotent stem cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24685138

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Parallel genome universes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24685138

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELREP.2014.03.007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24685138%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24685138%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

PubMed publication ID

24685138

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24685138%20AND%20SRC:MED&resulttype=core&format=json