RNAsnoop: efficient target prediction for H/ACA snoRNAs (Q43218260)

16 November 2017

RNAsnoop: efficient target prediction for H/ACA snoRNAs (English)

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16 November 2017

Stephanie Kehr

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language of work or name

English

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publication date

16 December 2009

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610-616

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Basic local alignment search tool

16 November 2017

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

The expanding snoRNA world

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

SnR30: a new, essential small nuclear RNA from Saccharomyces cerevisiae

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

RNAalifold: improved consensus structure prediction for RNA alignments

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Local RNA base pairing probabilities in large sequences.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Exploration of pairing constraints identifies a 9 base-pair core within box C/D snoRNA-rRNA duplexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

18S rRNA processing requires base pairings of snR30 H/ACA snoRNA to eukaryote-specific 18S sequences

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Fisher: a program for the detection of H/ACA snoRNAs using MFE secondary structure prediction and comparative genomics - assessment and update

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Rfam: updates to the RNA families database

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

minifly, a Drosophila gene required for ribosome biogenesis

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

BioMart Central Portal--unified access to biological data

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Secondary structure prediction for aligned RNA sequences

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Pseudouridine distribution in mammalian 18 S ribosomal RNA. A major cluster in the central region of the molecule

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Evolution of spliceosomal snRNA genes in metazoan animals

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Thermodynamics of RNA-RNA binding

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Locomotif: from graphical motif description to RNA motif search

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Accurate and efficient reconstruction of deep phylogenies from structured RNAs

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

RNAplex: a fast tool for RNA-RNA interaction search

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Small RNAs derived from snoRNAs

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Small nucleolar RNAs that guide modification in trypanosomatids: repertoire, targets, genome organisation, and unique functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

Functionality and substrate specificity of human box H/ACA guide RNAs

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTP680

10.1093/BIOINFORMATICS/BTP680

21 January 2018

Identifiers

DOI

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journals/bioinformatics/TaferKHHS10

16 November 2017

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DBLP Dataset 2021-01-02

28 January 2021

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PubMed ID

20015949