Robustness to divergence time underestimation when inferring species trees from estimated gene trees (Q43615911)

25 November 2017

title

Robustness to divergence time underestimation when inferring species trees from estimated gene trees (English)

1 reference

25 November 2017

Michael DeGiorgio

1

1 reference

25 November 2017

James H Degnan

series ordinal

2

1 reference

25 November 2017

publication date

29 August 2013

1 reference

25 November 2017

1 reference

25 November 2017

volume

63

1 reference

25 November 2017

issue

1

1 reference

25 November 2017

page(s)

66-82

1 reference

Species tree estimation for the late blight pathogen, Phytophthora infestans, and close relatives

25 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Estimating divergence times in large phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Species trees from highly incongruent gene trees in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

SpedeSTEM: a rapid and accurate method for species delimitation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Demographic history and genetic differentiation in apes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Bayesian inference of species trees from multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Improvements to a class of distance matrix methods for inferring species trees from gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

What is the danger of the anomaly zone for empirical phylogenetics?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

iGLASS: an improvement to the GLASS method for estimating species trees from gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Full modeling versus summarizing gene-tree uncertainty: method choice and species-tree accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Inferring species-level phylogenies and taxonomic distinctiveness using multilocus data in Sistrurus rattlesnakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

The accuracy of species tree estimation under simulation: a comparison of methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Pleistocene speciation in the genus Populus (salicaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Phybase: an R package for species tree analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Maximum tree: a consistent estimator of the species tree.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Estimating species phylogenies using coalescence times among sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Inferring phylogeny despite incomplete lineage sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Applications of next-generation sequencing to phylogeography and phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Incomplete lineage sorting: consistent phylogeny estimation from multiple loci.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

APE: Analyses of Phylogenetics and Evolution in R language

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Simulating trees with a fixed number of extant species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

SuperFine: fast and accurate supertree estimation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Species tree inference by minimizing deep coalescences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Links between maximum likelihood and maximum parsimony under a simple model of site substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYT059

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYT059

1 reference

25 November 2017

1 reference