Proline-induced hinges in transmembrane helices: possible roles in ion channel gating (Q43629656)

25 November 2017

Proline-induced hinges in transmembrane helices: possible roles in ion channel gating (English)

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25 November 2017

transmembrane protein

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author name string

Tieleman DP

1

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25 November 2017

Shrivastava IH

2

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25 November 2017

Ulmschneider MR

3

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25 November 2017

Sansom MS

4

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25 November 2017

language of work or name

English

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publication date

1 August 2001

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25 November 2017

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25 November 2017

44

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25 November 2017

2

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25 November 2017

63-72

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The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

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1 reference

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Structural rearrangements underlying K+-channel activation gating

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Hinges, swivels and switches: the role of prolines in signalling via transmembrane alpha-helices

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Hypothesis about the function of membrane-buried proline residues in transport proteins

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Helix geometry in proteins

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Proline kinks in transmembrane alpha-helices

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Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.

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Conserved positioning of proline residues in membrane-spanning helices of ion-channel proteins

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Structure and function of channel-forming peptaibols

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Minimum energy conformations of proline-containing helices

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Proline in alpha-helix: stability and conformation studied by dynamics simulation

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A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems

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Membrane simulations: bigger and better?

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Structure and dynamics of K channel pore-lining helices: a comparative simulation study

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Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics

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Prediction of transmembrane segments in proteins utilising multiple sequence alignments

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Prediction of membrane protein topology utilizing multiple sequence alignments.

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Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method

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Transmembrane helices predicted at 95% accuracy

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Topology prediction for helical transmembrane proteins at 86% accuracy

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A model recognition approach to the prediction of all-helical membrane protein structure and topology

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Voltage-dependent insertion of alamethicin at phospholipid/water and octane/water interfaces

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1 reference

GROMACS: A message-passing parallel molecular dynamics implementation

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1 reference

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

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Raster3D: photorealistic molecular graphics

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Essential dynamics of proteins

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Collective protein dynamics in relation to function

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Alamethicin: A Peptide Model for Voltage Gating and Protein-Membrane Interactions

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A voltage-gated ion channel model inferred from the crystal structure of alamethicin at 1.5-Å resolution

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Helix bending in alamethicin: molecular dynamics simulations and amide hydrogen exchange in methanol

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Alamethicin helices in a bilayer and in solution: molecular dynamics simulations

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Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations

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1 reference

The CLC chloride channel family

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A decade of CLC chloride channels: structure, mechanism, and many unsettled questions.

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Elimination of the slow gating of ClC-0 chloride channel by a point mutation

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Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin

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Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations

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Amino acid distributions in integral membrane protein structures

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Prolines are not essential residues in the "barrel-stave" model for ion channels induced by alamethicin analogues

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The role of proline and glycine in determining the backbone flexibility of a channel-forming peptide

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Structure-activity analysis of buforin II, a histone H2A-derived antimicrobial peptide: the proline hinge is responsible for the cell-penetrating ability of buforin II.

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Maculatin 1.1, an anti-microbial peptide from the Australian tree frog, Litoria genimaculata solution structure and biological activity.

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Structural and functional implications of a proline residue in the antimicrobial peptide gaegurin.

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Projection structure of a ClC-type chloride channel at 6.5 A resolution

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Three-dimensional architecture and gating mechanism of a K+ channel studied by EPR spectroscopy

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Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer

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Molecular dynamics with coupling to an external bath

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Acetylcholine receptor channel imaged in the open state

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21 January 2018

Identifiers

DOI

10.1002/PROT.1073

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25 November 2017

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