Measuring editing activity and identifying cytidine-to-uridine mRNA editing factors in cells and biochemical isolates (Q43814794)

27 November 2017

Measuring editing activity and identifying cytidine-to-uridine mRNA editing factors in cells and biochemical isolates (English)

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27 November 2017

1

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PubMed ID

17662851

27 November 2017

language of work or name

English

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publication date

1 January 2007

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27 November 2017

Methods in Enzymology

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27 November 2017

424

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27 November 2017

389-416

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Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli.

27 November 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

An AU-rich sequence element (UUUN[A/U]U) downstream of the edited C in apolipoprotein B mRNA is a high-affinity binding site for Apobec-1: binding of Apobec-1 to this motif in the 3' untranslated region of c-myc increases mRNA stability

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Evolutionary origins of the mammalian apolipoproteinB RNA editing enzyme, apobec-1: structural homology inferred from analysis of a cloned chicken small intestinal cytidine deaminase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Novel role for RNA-binding protein CUGBP2 in mammalian RNA editing. CUGBP2 modulates C to U editing of apolipoprotein B mRNA by interacting with apobec-1 and ACF, the apobec-1 complementation factor

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

ARCD-1, an apobec-1-related cytidine deaminase, exerts a dominant negative effect on C to U RNA editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Apolipoprotein B mRNA sequences 3' of the editing site are necessary and sufficient for editing and editosome assembly

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Three distinct RNA sequence elements are required for efficient apolipoprotein B (apoB) RNA editing in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

APOBEC-1 and AID are nucleo-cytoplasmic trafficking proteins but APOBEC3G cannot traffic

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

APOBEC-mediated editing of viral RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Mutagenesis of apobec-1 complementation factor reveals distinct domains that modulate RNA binding, protein-protein interaction with apobec-1, and complementation of C to U RNA-editing activity

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Identification of GRY-RBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

A novel nuclear localization signal in the auxiliary domain of apobec-1 complementation factor regulates nucleocytoplasmic import and shuttling

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Apolipoprotein B-48 is the product of a messenger RNA with an organ-specific in-frame stop codon.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

The apolipoprotein B mRNA editing complex performs a multifunctional cycle and suppresses nonsense-mediated decay

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Optimization of apolipoprotein B mRNA editing by APOBEC1 apoenzyme and the role of its auxiliary factor, ACF.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Genetic and in vitro assays of DNA deamination

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https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

APOBEC-1 dependent cytidine to uridine editing of apolipoprotein B RNA in yeast

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Identification of the yeast cytidine deaminase CDD1 as an orphan C-->U RNA editase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Two proteins essential for apolipoprotein B mRNA editing are expressed from a single gene through alternative splicing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

An in vitro system for the editing of apolipoprotein B mRNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Induction of RNA editing at heterologous sites by sequences in apolipoprotein B mRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Increasing the yield of soluble recombinant protein expressed in E. coli by induction during late log phase.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Inhibition of the apolipoprotein B mRNA editing enzyme-complex by hnRNP C1 protein and 40S hnRNP complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Molecular cloning of a human small intestinal apolipoprotein B mRNA editing protein

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

DNA deamination mediates innate immunity to retroviral infection

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Two efficiency elements flanking the editing site of cytidine 6666 in the apolipoprotein B mRNA support mooring-dependent editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Phylogenetic analysis of the apolipoprotein B mRNA-editing region. Evidence for a secondary structure between the mooring sequence and the 3' efficiency element

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Targeted disruption of the mouse apobec-1 gene abolishes apolipoprotein B mRNA editing and eliminates apolipoprotein B48

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Structural phylogenetic analysis of activation-induced deaminase function

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Mapping and sequencing of mutations in the Escherichia colirpoB gene that lead to rifampicin resistance

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

The mechanism for apo-B mRNA editing is deamination.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Involvement of a Chaperone Regulator, Bcl2-associated Athanogene-4, in Apolipoprotein B mRNA Editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Dimeric structure of a human apolipoprotein B mRNA editing protein and cloning and chromosomal localization of its gene

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Cloning of an Apobec-1-binding protein that also interacts with apolipoprotein B mRNA and evidence for its involvement in RNA editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Two-hybrid cloning identifies an RNA-binding protein, GRY-RBP, as a component of apobec-1 editosome

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

A DnaJ protein, apobec-1-binding protein-2, modulates apolipoprotein B mRNA editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Functional characterization of APOBEC-1 complementation factor phosphorylation sites

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Metabolic regulation of apoB mRNA editing is associated with phosphorylation of APOBEC-1 complementation factor

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Purification and molecular cloning of a novel essential component of the apolipoprotein B mRNA editing enzyme-complex

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

A sequence-specific RNA-binding protein complements apobec-1 To edit apolipoprotein B mRNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Identification of domains in apobec-1 complementation factor required for RNA binding and apolipoprotein-B mRNA editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Apobec-1 interacts with a 65-kDa complementing protein to edit apolipoprotein-B mRNA in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Molecular cloning of apobec-1 complementation factor, a novel RNA-binding protein involved in the editing of apolipoprotein B mRNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Statistical modelling and phylogenetic analysis of a deaminase domain

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Site-specific modification of pre-mRNA: the 2'-hydroxyl groups at the splice sites

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

C-->U editing of neurofibromatosis 1 mRNA occurs in tumors that express both the type II transcript and apobec-1, the catalytic subunit of the apolipoprotein B mRNA-editing enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Alternative mRNA splicing and differential promoter utilization determine tissue-specific expression of the apolipoprotein B mRNA-editing protein (Apobec1) gene in mice. Structure and evolution of Apobec1 and related nucleoside/nucleotide deaminases

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Complete phenotypic characterization of apobec-1 knockout mice with a wild-type genetic background and a human apolipoprotein B transgenic background, and restoration of apolipoprotein B mRNA editing by somatic gene transfer of Apobec-1

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

An additional editing site is present in apolipoprotein B mRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Apolipoprotein B mRNA editing is associated with UV crosslinking of proteins to the editing site

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Evolutionary origins of apoB mRNA editing: catalysis by a cytidine deaminase that has acquired a novel RNA-binding motif at its active site

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Escherichia coli cytidine deaminase provides a molecular model for ApoB RNA editing and a mechanism for RNA substrate recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

In Vitro Deamination of Cytosine to Uracil in Single-stranded DNA by Apolipoprotein B Editing Complex Catalytic Subunit 1 (APOBEC1)

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

An auxiliary factor containing a 240-kDa protein complex is involved in apolipoprotein B RNA editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Disproportionate relationship between APOBEC-1 expression and apolipoprotein B mRNA editing activity

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

The neurofibromatosis type I messenger RNA undergoes base-modification RNA editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Apolipoprotein B mRNA editing: the sequence to the event

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Analysis of protein complexes assembled on apolipoprotein B mRNA for mooring sequence-dependent RNA editing.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Spatial distribution of DNA loop attachment and replicational sites in the nuclear matrix

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

In vitro apolipoprotein B mRNA editing: identification of a 27S editing complex

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Overexpression of APOBEC-1 results in mooring sequence-dependent promiscuous RNA editing.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Apolipoprotein B RNA sequence 3' of the mooring sequence and cellular sources of auxiliary factors determine the location and extent of promiscuous editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Identification of novel alternative splice variants of APOBEC-1 complementation factor with different capacities to support apolipoprotein B mRNA editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Molecular cloning of an apolipoprotein B messenger RNA editing protein

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

The structure of a yeast RNA-editing deaminase provides insight into the fold and function of activation-induced deaminase and APOBEC-1

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Intestinal lipoprotein assembly in apobec-1-/- mice reveals subtle alterations in triglyceride secretion coupled with a shift to larger lipoproteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Apolipoprotein B mRNA-editing protein induces hepatocellular carcinoma and dysplasia in transgenic animals

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Hyperediting of multiple cytidines of apolipoprotein B mRNA by APOBEC-1 requires auxiliary protein(s) but not a mooring sequence motif

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

A novel translational repressor mRNA is edited extensively in livers containing tumors caused by the transgene expression of the apoB mRNA-editing enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

In vitro reconstitution of apolipoprotein B RNA editing activity from recombinant APOBEC-1 and McArdle cell extracts

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Multiple protein domains determine the cell type-specific nuclear distribution of the catalytic subunit required for apolipoprotein B mRNA editing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Partial characterization of the auxiliary factors involved in apolipoprotein B mRNA editing through APOBEC-1 affinity chromatography.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Induction of cytidine to uridine editing on cytoplasmic apolipoprotein B mRNA by overexpressing APOBEC-1

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Intracellular trafficking determinants in APOBEC-1, the catalytic subunit for cytidine to uridine editing of apolipoprotein B mRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Human APOBEC3F is another host factor that blocks human immunodeficiency virus type 1 replication

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

Gel electrophoretic isolation of splicing complexes containing U1 small nuclear ribonucleoprotein particles

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

A multicomponent complex is involved in the splicing of messenger RNA precursors

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2807%2924018-2

7 January 2021

10.1016/S0076-6879(07)24018-2

Identifiers

DOI

1 reference

27 November 2017

1 reference

PubMed ID

17662851