PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information. (Q44035464)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23335013%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23335013%20AND%20SRC:MED&resulttype=core&format=json

protein structure prediction

22 February 2020

main subject

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0 references

3

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22 February 2020

Yongchun Zuo

5

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22 February 2020

author name string

Tao Li

1

1 reference

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22 February 2020

Qian-Zhong Li

2

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22 February 2020

Guo-Liang Fan

4

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22 February 2020

Yong Peng

6

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22 February 2020

language of work or name

English

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publication date

17 January 2013

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22 February 2020

number of pages

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

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22 February 2020

volume

29

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22 February 2020

issue

6

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22 February 2020

page(s)

678-685

1 reference

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Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information

22 February 2020

cites work

1 reference

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PSSM-based prediction of DNA binding sites in proteins

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Methylation and uracil interference assays for analysis of protein-DNA interactions

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Quantitative DNase footprint titration: a method for studying protein-DNA interactions

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Rescuing the function of mutant p53.

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Support Vector Machines for predicting HIV protease cleavage sites in protein.

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A simple in vivo footprinting method to examine DNA-protein interactions over the yeast PYK UAS element

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DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions

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Protein structure comparison by alignment of distance matrices

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DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins

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Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins.

21 January 2018

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Chromatin Structure: A Repeating Unit of Histones and DNA

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Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins

21 January 2018

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An overview of the structures of protein-DNA complexes

21 January 2018

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Prediction of DNA-binding residues from sequence

21 January 2018

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Regulation of transcription: from lambda to eukaryotes

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Prediction of zinc-binding sites in proteins from sequence.

21 January 2018

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Structural alignment of protein--DNA interfaces: insights into the determinants of binding specificity.

21 January 2018

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Measuring the accuracy of diagnostic systems

21 January 2018

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Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces

21 January 2018

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21 January 2018

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Prediction of DNA-binding residues from protein sequence information using random forests

21 January 2018

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21 January 2018

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Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature

21 January 2018

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A novel method for accurate one-dimensional protein structure prediction based on fragment matching.

21 January 2018

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10.1093/BIOINFORMATICS/BTT029

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23335013%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/LiLLFZP13

22 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23335013%20AND%20SRC:MED&resulttype=core&format=json