Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments (Q44694481)

5 December 2017

title

Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments (English)

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5 December 2017

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Geobacter uraniireducens

object named as

Geobacter uraniireducens

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10

Derek R Lovley

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5 December 2017

1

Dawn E Holmes

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5 December 2017

Regina A O'Neil

2

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5 December 2017

Milind A Chavan

3

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5 December 2017

Lucie A N'Guessan

4

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5 December 2017

Helen A Vrionis

5

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5 December 2017

Lorrie A Perpetua

6

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5 December 2017

M Juliana Larrahondo

7

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5 December 2017

Raymond DiDonato

8

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5 December 2017

Anna Liu

9

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5 December 2017

publication date

9 October 2008

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5 December 2017

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5 December 2017

volume

3

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5 December 2017

issue

2

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5 December 2017

page(s)

216-230

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Basic local alignment search tool

5 December 2017

cites work

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The bacterial metallome: composition and stability with specific reference to the anaerobic bacterium Desulfovibrio desulfuricans

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7 January 2021

Characterization of a unique chromosomal copper resistance gene cluster from Xanthomonas campestris pv. vesicatoria

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7 January 2021

Global transcriptional profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction

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7 January 2021

Gene expression analysis of Escherichia coli grown in miniaturized bioreactor platforms for high-throughput analysis of growth and genomic data

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7 January 2021

Genes involved in cadmium resistance in Caulobacter crescentus

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7 January 2021

Mercury transport and resistance

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

MacA, a diheme c-type cytochrome involved in Fe(III) reduction by Geobacter sulfurreducens

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7 January 2021

The nitrogenase system from Azotobacter: two-enzyme requirement for N2 reduction, ATP-dependent H2 evolution, and ATP hydrolysis

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7 January 2021

Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens

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Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b

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7 January 2021

Effect of heavy metal stress on proline, malondialdehyde, and superoxide dismutase activity in the cyanobacterium Spirulina platensis-S5

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7 January 2021

Biological control of hog waste odor through stimulated microbial Fe(III) reduction

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7 January 2021

The hydrogenases of Geobacter sulfurreducens: a comparative genomic perspective

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7 January 2021

Development of a genetic system for Geobacter sulfurreducens

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7 January 2021

Involvement of Geobacter sulfurreducens SfrAB in acetate metabolism rather than intracellular, respiration-linked Fe(III) citrate reduction

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Identification of an uptake hydrogenase required for hydrogen-dependent reduction of Fe(III) and other electron acceptors by Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

CsrA regulates translation of the Escherichia coli carbon starvation gene, cstA, by blocking ribosome access to the cstA transcript

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Locating proteins in the cell using TargetP, SignalP and related tools

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Preferential reduction of FeIII over fumarate by Geobacter sulfurreducens.

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Fluorescent properties of c-type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter sulfurreducens

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

The manganese and iron superoxide dismutases protect Escherichia coli from heavy metal toxicity.

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

The importance of culturing bacterioplankton in the 'omics' age.

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Global gene expression differences associated with changes in glycolytic flux and growth rate in Escherichia coli during the fermentation of glucose and xylose

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Molybdate transport and regulation in bacteria

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Nitrogenase and nitrogenase reductase associate and dissociate with each catalytic cycle

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

In situ expression of nifD in Geobacteraceae in subsurface sediments

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Differential protein expression in the metal-reducing bacterium Geobacter sulfurreducens strain PCA grown with fumarate or ferric citrate

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

OmcF, a putative c-Type monoheme outer membrane cytochrome required for the expression of other outer membrane cytochromes in Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Investigation of direct vs. indirect involvement of the c-type cytochrome MacA in Fe(III) reduction by Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Two putative c-type multiheme cytochromes required for the expression of OmcB, an outer membrane protein essential for optimal Fe(III) reduction in Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Isolation of an autotrophic ammonia-oxidizing marine archaeon

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Regulation of two highly similar genes, omcB and omcC, in a 10 kb chromosomal duplication in Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Geobacteraceae community composition is related to hydrochemistry and biodegradation in an iron-reducing aquifer polluted by a neighboring landfill

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Cleaning up with genomics: applying molecular biology to bioremediation

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https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Bug juice: harvesting electricity with microorganisms

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Dissimilatory Fe(III) and Mn(IV) reduction

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Organic matter mineralization with reduction of ferric iron in anaerobic sediments

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Rapid assay for microbially reducible ferric iron in aquatic sediments

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

A putative multicopper protein secreted by an atypical type II secretion system involved in the reduction of insoluble electron acceptors in Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Outer membrane c-type cytochromes required for Fe(III) and Mn(IV) oxide reduction in Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Nitrogen and oxygen regulation of Bacillus subtilis nasDEF encoding NADH-dependent nitrite reductase by TnrA and ResDE.

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

The cobalt, zinc, and cadmium efflux system CzcABC from Alcaligenes eutrophus functions as a cation-proton antiporter in Escherichia coli

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Microbial heavy-metal resistance

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Gene function analysis in environmental isolates: the nif regulon of the strict iron oxidizing bacterium Leptospirillum ferrooxidans

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Comparative genomics of regulation of heavy metal resistance in Eubacteria

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Benefits of in-situ synthesized microarrays for analysis of gene expression in understudied microorganisms

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Evidence that OmcB and OmpB of Geobacter sulfurreducens are outer membrane surface proteins

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

New functions for the three subunits of the CzcCBA cation-proton antiporter

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Importance of c-Type cytochromes for U(VI) reduction by Geobacter sulfurreducens

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Enzymology and bioenergetics of respiratory nitrite ammonification.

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Biological enhancement of tetrachloroethene dissolution and associated microbial community changes

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Normalization of cDNA microarray data

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Molybdate transport and its effect on nitrogen utilization in the cyanobacterium Anabaena variabilis ATCC 29413.

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2008.89

7 January 2021

Identifiers

DOI

10.1038/ISMEJ.2008.89

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5 December 2017

1 reference