Synonymous codon usage in adenoviruses: influence of mutation, selection and protein hydropathy (Q44753997)

6 December 2017

title

Synonymous codon usage in adenoviruses: influence of mutation, selection and protein hydropathy (English)

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6 December 2017

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Sandip Paul

2

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Chitra Dutta

series ordinal

3

object named as

Chitra Dutta

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6 December 2017

Sabyasachi Das

1

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6 December 2017

publication date

22 November 2005

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6 December 2017

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6 December 2017

volume

117

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6 December 2017

issue

2

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6 December 2017

page(s)

227-236

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Non-random usage of 'degenerate' codons is related to protein three-dimensional structure

6 December 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Codon bias evolution in Drosophila. Population genetics of mutation-selection drift

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

First molecular evidence for the existence of distinct fish and snake adenoviruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

A proposal for a new (third) genus within the family Adenoviridae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Codon and amino acid usage in retroviral genomes is consistent with virus-specific nucleotide pressure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Correlations of nucleotide substitution rates and base composition of mammalian coding sequences with protein structure.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Silent mutations affect in vivo protein folding in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Codon and amino acid usage in two major human pathogens of genus Bartonella--optimization between replicational-transcriptional selection, translational control and cost minimization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Comparative analyses of codon and amino acid usage in symbiotic island and core genome in nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Compositional variation in bacterial genes and proteins with potential expression level

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Genetic content and evolution of adenoviruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Gene expression, amino acid conservation, and hydrophobicity are the main factors shaping codon preferences in Mycobacterium tuberculosis and Mycobacterium leprae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

The correlation of protein hydropathy with the base composition of coding sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

GOR method for predicting protein secondary structure from amino acid sequence.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Strand-specific compositional asymmetries in double-stranded DNA viruses.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Role of structural and sequence information in the prediction of protein stability changes: comparison between buried and partially buried mutations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Reptile adenoviruses in cattle?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

The correlation between GC3 and hydropathy in human genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

The extent of codon usage bias in human RNA viruses and its evolutionary origin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Systematic base composition variation around the genome of Mycoplasma genitalium , but not Mycoplasma pneumoniae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

A simple method for displaying the hydropathic character of a protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Absence of translationally selected synonymous codon usage bias in Helicobacter pylori.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Adenovirus and adeno-associated virus vectors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Codon usage in nucleopolyhedroviruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Hydropathic characteristics of adenovirus hexons

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Replicational and transcriptional selection on codon usage in Borrelia burgdorferi

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Translational selection is operative for synonymous codon usage in Clostridium perfringens and Clostridium acetobutylicum.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Codon usage in highly expressed genes of Haemophillus influenzae and Mycobacterium tuberculosis: translational selection versus mutational bias

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Codon usage in Chlamydia trachomatis is the result of strand-specific mutational biases and a complex pattern of selective forces

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

An evolutionary perspective on synonymous codon usage in unicellular organisms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

The tendency of lentiviral open reading frames to become A-rich: constraints imposed by viral genome organization and cellular tRNA availability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Viral vectors for gene transfer: a review of their use in the treatment of human diseases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

The 'effective number of codons' used in a gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Codon usage bias and A+T content variation in human papillomavirus genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

Adenovirus E3-10.4K/14.5K protein complex inhibits tumor necrosis factor-induced translocation of cytosolic phospholipase A2 to membranes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2005.10.007

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7 January 2021

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Identifiers

DOI

10.1016/J.VIRUSRES.2005.10.007

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6 December 2017

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