Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages. (Q44759259)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

0 references

1 reference

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Beth Shapiro

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Martyna Molak

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

4

Simon Y W Ho

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

publication date

3 October 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

Molecular Biology and Evolution

9 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

volume

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

page(s)

253-262

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23024187%20AND%20SRC:MED&resulttype=core&format=json

Serial SimCoal: a population genetics model for data from multiple populations and points in time

9 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Phylogeography of lions (Panthera leo ssp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Radiocarbon Calibration and Analysis of Stratigraphy: The OxCal Program

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Rate variation and estimation of divergence times using strict and relaxed clocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Ancient DNA reveals lack of postglacial habitat tracking in the arctic fox

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Faunal histories from Holocene ancient DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Relaxed phylogenetics and dating with confidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Measurably evolving populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

BEAST: Bayesian evolutionary analysis by sampling trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

SIMCOAL: a general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Rapid molecular evolution in a living fossil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

An examination of phylogenetic models of substitution rate variation among lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Elevated substitution rates estimated from ancient DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Time-dependent rates of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Bayesian estimation of substitution rates from ancient DNA sequences with low information content

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Molecular clocks: when times are a-changin'

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

The effect of inappropriate calibration: three case studies in molecular ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Sudden expansion of a single brown bear maternal lineage across northern continental Eurasia after the last ice age: a general demographic model for mammals?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Phylogenetic uncertainty and molecular clock calibrations: a case study of legless lizards (Pygopodidae, Gekkota).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Species-specific responses of Late Quaternary megafauna to climate and humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the isthmus of panama

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

A new radiocarbon revolution and the dispersal of modern humans in Eurasia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Rise and fall of the Beringian steppe bison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

A Bayesian phylogenetic method to estimate unknown sequence ages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Bayesian selection of continuous-time Markov chain evolutionary models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

A 60,000 year Greenland stratigraphic ice core chronology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Prehistoric Sado Island populations of Sus scrofa distinguished from contemporary Japanese wild boar by ancient mitochondrial DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Ancient mitochondrial DNA reveals the origin of Sus scrofa from Rebun Island, Japan.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

The re-emergence of H1N1 influenza virus in 1977: a cautionary tale for estimating divergence times using biologically unrealistic sampling dates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232

Discussion Reporting of 14C Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS232