TargetATPsite: a template-free method for ATP-binding sites prediction with residue evolution image sparse representation and classifier ensemble. (Q45959808)

From Wikidata

Jump to navigation Jump to search

scientific article published on 3 January 2013

Language	Label	Description	Also known as
English	TargetATPsite: a template-free method for ATP-binding sites prediction with residue evolution image sparse representation and classifier ensemble.	scientific article published on 3 January 2013

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

TargetATPsite: a template-free method for ATP-binding sites prediction with residue evolution image sparse representation and classifier ensemble. (English)

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

author name string

Dong-Jun Yu

1

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

Jun Hu

2

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

Yan Huang

3

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

Hong-Bin Shen

4

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

Yong Qi

5

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

Zhen-Min Tang

6

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

Jing-Yu Yang

7

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

publication date

3 January 2013

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

Journal of Computational Chemistry

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

34

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

11

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

974-985

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

The distribution of ligand-binding pockets around protein-protein interfaces suggests a general mechanism for pocket formation

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Understanding and predicting druggability. A high-throughput method for detection of drug binding sites

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Identification of ATP binding residues of a protein from its primary sequence

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

ATPsite: sequence-based prediction of ATP-binding residues

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

FINDSITE: a threading-based approach to ligand homology modeling

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

HemeBIND: a novel method for heme binding residue prediction by combining structural and sequence information

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

POCKET: a computer graphics method for identifying and displaying protein cavities and their surrounding amino acids

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Fpocket: an open source platform for ligand pocket detection.

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

L1pred: a sequence-based prediction tool for catalytic residues in enzymes with the L1-logreg classifier

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

A method for localizing ligand binding pockets in protein structures

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

SITEHOUND-web: a server for ligand binding site identification in protein structures.

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Predicting metal-binding site residues in low-resolution structural models.

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

FINDSITE-metal: integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Prediction of RNA binding sites in a protein using SVM and PSSM profile.

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Computational prediction of heme-binding residues by exploiting residue interaction network

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Biochemical and molecular characterization of diseases linked to motor proteins

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Conformation-dependent intermolecular interaction energies of the triphosphate anion with divalent metal cations. Application to the ATP-binding site of a binuclear bacterial enzyme. A parallel quantum chemical and polarizable molecular mechanics in

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Analysis of the Soluble ATP-Binding Proteome of Plant Mitochondria Identifies New Proteins and Nucleotide Triphosphate Interactions within the Matrix

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Comparative protein structure modeling of genes and genomes

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

SuperSite: dictionary of metabolite and drug binding sites in proteins

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Exploratory undersampling for class-imbalance learning.

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Conserved residue clustering and protein structure prediction.

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Protein structure modeling with MODELLER

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Macromolecular modeling with rosetta

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

I-TASSER: a unified platform for automated protein structure and function prediction

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

From classifiers to discriminators: A nearest neighbor rule induced discriminant analysis

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Ab Initio prediction of protein-ligand binding structures by replica-exchange umbrella sampling simulations

1 reference

https://api.crossref.org/works/10.1002%2FJCC.23219

21 January 2018

Identifiers

10.1002/JCC.23219

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

DBLP publication ID

journals/jcc/YuHHSQTY13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

release_pgzyin4ljveinpaec3ps5xnecq

1 reference

https://api.fatcat.wiki/v0/release/pgzyin4ljveinpaec3ps5xnecq

24 November 2022

based on heuristic

mapped directly with Wikidata item

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/23288787

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q45959808&oldid=1838480495"