Nematode small subunit phylogeny correlates with alignment parameters (Q46086865)

19 December 2017

title

Nematode small subunit phylogeny correlates with alignment parameters (English)

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19 December 2017

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3

Steven A Nadler

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19 December 2017

author name string

Ashleigh B Smythe

series ordinal

1

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19 December 2017

Michael J Sanderson

series ordinal

2

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19 December 2017

publication date

1 December 2006

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19 December 2017

published in

Systematic Biology

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19 December 2017

volume

55

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19 December 2017

issue

6

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19 December 2017

page(s)

972-992

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19 December 2017

Evidence for a clade of nematodes, arthropods and other moulting animals

cites work

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

A phylogeny of extant penguins (Aves: Sphenisciformes) combining morphology and mitochondrial sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

A molecular evolutionary framework for the phylum Nematoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

The designation of official names for higher taxa of invertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Buccal capsule development as a consideration for phylogenetic analysis of Rhabditida (Nemata).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Molecular analysis of nematode diversity and the evolution of parasitism

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

The rDNA of C. elegans: sequence and structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

A benchmark of multiple sequence alignment programs upon structural RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Alignment-ambiguous nucleotide sites and the exclusion of systematic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Characterizing regions of ambiguous alignment caused by the expansion and contraction of hairpin-stem loops in ribosomal RNA molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an rRNA sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Ribosomal DNA: Molecular Evolution and Phylogenetic Inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Evolution and phylogenetic utility of alignment gaps within intron sequences of three nuclear genes in bumble bees (Bombus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Aligned 18S and insect phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Molecular phylogenetic analyses of the mitochondrial ADP-ATP carriers: the Plantae/Fungi/Metazoa trichotomy revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

A hidden Markov model for progressive multiple alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of apicomplexa

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Phylogeny of the Ascaridoidea (Nematoda: Ascaridida) based on three genes and morphology: hypotheses of structural and sequence evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Evolution of symbiosis in the Vibrionaceae: a combined approach using molecules and physiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

The phylogenetic analysis of variable-length sequence data: elongation factor-1alpha introns in European populations of the parasitoid wasp genus Pauesia (Hymenoptera: Braconidae: Aphidiinae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the bilateria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Implied alignment: a synapomorphy-based multiple-sequence alignment method and its use in cladogram search

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

18S ribosomal RNA and tetrapod phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

Generating implied alignments under direct optimization using POY

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150601089001

10.1080/10635150601089001

21 January 2018

Identifiers

DOI

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19 December 2017

PubMed ID

17345678

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19 December 2017