The landscape of human mutually exclusive splicing. (Q47152826)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29242366%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

title

The landscape of human mutually exclusive splicing (English)

1 reference

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7 April 2020

6

1 reference

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7 April 2020

Ashish Rajput

7

1 reference

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7 April 2020

Stefan Bonn

10

1 reference

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7 April 2020

Martin Kollmar

11

1 reference

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7 April 2020

1

Klas Hatje

1 reference

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7 April 2020

author name string

Raza-Ur Rahman

2

1 reference

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7 April 2020

Ramon O Vidal

3

1 reference

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7 April 2020

Dominic Simm

4

1 reference

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7 April 2020

Björn Hammesfahr

5

1 reference

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7 April 2020

Michel Edwar Mickael

8

1 reference

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7 April 2020

Ting Sun

9

1 reference

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7 April 2020

publication date

14 December 2017

1 reference

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Molecular Systems Biology

7 April 2020

published in

1 reference

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7 April 2020

volume

13

1 reference

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7 April 2020

issue

12

1 reference

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7 April 2020

page(s)

959

1 reference

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Detect tissue heterogeneity in gene expression data with BioQC.

7 April 2020

cites work

1 reference

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Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

23 May 2018

1 reference

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The ribosome-engaged landscape of alternative splicing

23 May 2018

1 reference

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Alternative Splicing May Not Be the Key to Proteome Complexity

23 May 2018

1 reference

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Recommendations for the integration of genomics into clinical practice

23 May 2018

1 reference

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Tunable protein synthesis by transcript isoforms in human cells

23 May 2018

1 reference

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23 May 2018

1 reference

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ClinVar: public archive of interpretations of clinically relevant variants

23 May 2018

1 reference

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The Genetic Basis of Mendelian Phenotypes: Discoveries, Challenges, and Opportunities

23 May 2018

1 reference

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Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level.

23 May 2018

1 reference

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The evolutionary fate of alternatively spliced homologous exons after gene duplication

23 May 2018

1 reference

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Mechanisms and Regulation of Alternative Pre-mRNA Splicing

23 May 2018

1 reference

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Most highly expressed protein-coding genes have a single dominant isoform.

23 May 2018

1 reference

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A highly conserved program of neuronal microexons is misregulated in autistic brains

23 May 2018

1 reference

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RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease

23 May 2018

1 reference

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A peroxisomal disorder of severe intellectual disability, epilepsy, and cataracts due to fatty acyl-CoA reductase 1 deficiency

23 May 2018

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The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

23 May 2018

1 reference

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UniProt: a hub for protein information

23 May 2018

1 reference

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Comparative analysis of the transcriptome across distant species

23 May 2018

1 reference

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Kassiopeia: a database and web application for the analysis of mutually exclusive exomes of eukaryotes

23 May 2018

1 reference

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Shared gene structures and clusters of mutually exclusive spliced exons within the metazoan muscle myosin heavy chain genes

23 May 2018

1 reference

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Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

23 May 2018

1 reference

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Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

23 May 2018

1 reference

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Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

23 May 2018

1 reference

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Alternative splicing of mutually exclusive exons--a review

23 May 2018

1 reference

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Frac-seq reveals isoform-specific recruitment to polyribosomes

23 May 2018

1 reference

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WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

23 May 2018

1 reference

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WebScipio: Reconstructing alternative splice variants of eukaryotic proteins

23 May 2018

1 reference

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Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.

23 May 2018

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23 May 2018

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STAR: ultrafast universal RNA-seq aligner

23 May 2018

1 reference

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Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

23 May 2018

1 reference

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Landscape of transcription in human cells

23 May 2018

1 reference

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Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks

23 May 2018

1 reference

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Evolution of the eukaryotic dynactin complex, the activator of cytoplasmic dynein

23 May 2018

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Conservation and regulation of alternative splicing by dynamic inter- and intra-intron base pairings in Lepidoptera 14-3-3ξ pre-mRNAs

23 May 2018

1 reference

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Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function

23 May 2018

1 reference

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Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands

23 May 2018

1 reference

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Human genome sequencing in health and disease

23 May 2018

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23 May 2018

ViennaRNA Package 2.0

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Exome sequencing as a tool for Mendelian disease gene discovery

23 May 2018

1 reference

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Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology

23 May 2018

1 reference

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Genome-wide association between branch point properties and alternative splicing

23 May 2018

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The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

23 May 2018

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Expansion of the eukaryotic proteome by alternative splicing

23 May 2018

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BEDTools: a flexible suite of utilities for comparing genomic features

23 May 2018

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HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer

23 May 2018

1 reference

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BLAST+: architecture and applications

23 May 2018

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Massive expansions of Dscam splicing diversity via staggered homologous recombination during arthropod evolution

23 May 2018

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The Sequence Alignment/Map format and SAMtools

23 May 2018

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An ancient duplication of exon 5 in the Snap25 gene is required for complex neuronal development/function

23 May 2018

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

23 May 2018

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Alternative isoform regulation in human tissue transcriptomes

23 May 2018

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Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

23 May 2018

1 reference

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Comparative genomic analysis of the arthropod muscle myosin heavy chain genes allows ancestral gene reconstruction and reveals a new type of 'partially' processed pseudogene

23 May 2018

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SeqAn an efficient, generic C++ library for sequence analysis

23 May 2018

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Structural basis of Dscam isoform specificity

23 May 2018

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AceView: a comprehensive cDNA-supported gene and transcripts annotation

23 May 2018

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Alternative splicing in human transcriptome: functional and structural influence on proteins.

23 May 2018

1 reference

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Alternative splicing: new insights from global analyses

23 May 2018

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M-Coffee: combining multiple sequence alignment methods with T-Coffee

23 May 2018

1 reference

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Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures

23 May 2018

1 reference

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Alternative splicing--when two's a crowd

23 May 2018

1 reference

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ROCR: visualizing classifier performance in R

23 May 2018

1 reference

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Splicing regulates NAD metabolite binding to histone macroH2A.

23 May 2018

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Understanding alternative splicing: towards a cellular code

23 May 2018

1 reference

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Severe arrhythmia disorder caused by cardiac L-type calcium channel mutations

23 May 2018

1 reference

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Ca(V)1.2 calcium channel dysfunction causes a multisystem disorder including arrhythmia and autism

23 May 2018

1 reference

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The organization and evolution of the dipteran and hymenopteran Down syndrome cell adhesion molecule (Dscam) genes

23 May 2018

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

23 May 2018

1 reference

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Evolutionary convergence of alternative splicing in ion channels

23 May 2018

1 reference

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Gene prediction with a hidden Markov model and a new intron submodel

23 May 2018

1 reference

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Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution

23 May 2018

1 reference

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Common exon duplication in animals and its role in alternative splicing

23 May 2018

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Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity

23 May 2018

1 reference

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Mutations in ACTN4, encoding alpha-actinin-4, cause familial focal segmental glomerulosclerosis

23 May 2018

1 reference

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Classification of introns: U2-type or U12-type

23 May 2018

1 reference

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Flip and Flop: A Cell-Specific Functional Switch in Glutamate-Operated Channels of the CNS

23 May 2018

1 reference

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Mutually exclusive exon splicing of the cardiac calcium channel alpha 1 subunit gene generates developmentally regulated isoforms in the rat heart

23 May 2018

1 reference

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Most Alternative Isoforms Are Not Functionally Important.

23 May 2018

1 reference

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The Relationship between Alternative Splicing and Proteomic Complexity.

15 August 2018

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Expansion of the mutually exclusive spliced exome in Drosophila.

15 August 2018

1 reference

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Mechanistic insights into mutually exclusive splicing in dynamin 1.

15 August 2018

1 reference

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Tissue-specific alternative splicing remodels protein-protein interaction networks

15 August 2018

1 reference

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Deficiency of the mitochondrial phosphate carrier presenting as myopathy and cardiomyopathy in a family with three affected children.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5740500

The evolutionary landscape of alternative splicing in vertebrate species

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5740500

3 November 2018

Identifiers

DOI

10.15252/MSB.20177728

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29242366%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29242366%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

PubMed publication ID

29242366

1 reference