Computational approach to discriminate human and mouse sequences in patient-derived tumour xenografts (Q47204651)

http://europepmc.org/abstract/PMC/5755132

11 January 2018

title

Computational approach to discriminate human and mouse sequences in patient-derived tumour xenografts (English)

1 reference

http://europepmc.org/abstract/PMC/5755132

11 January 2018

1 reference

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Stephen John Sammut

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Wendy Greenwood

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Carlos Caldas

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

author name string

Ankita Sati Batra

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Rajbir Nath Batra

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Harry Clifford

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Colin Hercus

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Alejandra Bruna

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Oscar M Rueda

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Suet-Feung Chin

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

language of work or name

English

0 references

publication date

5 January 2018

1 reference

http://europepmc.org/abstract/PMC/5755132

11 January 2018

published in

BMC Genomics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

volume

19

1 reference

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2 June 2020

issue

1

1 reference

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2 June 2020

page(s)

19

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

Next-Generation Sequencing Analysis and Algorithms for PDX and CDX Models

2 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Intersect-then-combine approach: improving the performance of somatic variant calling in whole exome sequencing data using multiple aligners and callers

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Interrogating open issues in cancer precision medicine with patient-derived xenografts.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Disambiguate: An open-source application for disambiguating two species in next generation sequencing data from grafted samples.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Patient-derived tumour xenografts for breast cancer drug discovery

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Context-Specific Effects of TGF-β/SMAD3 in Cancer Are Modulated by the Epigenome.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

High-throughput screening using patient-derived tumor xenografts to predict clinical trial drug response.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Maintaining Tumor Heterogeneity in Patient-Derived Tumor Xenografts

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

HTSeq--a Python framework to work with high-throughput sequencing data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Patient-derived xenograft models: an emerging platform for translational cancer research

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Discovery and saturation analysis of cancer genes across 21 tumour types

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Pan-cancer patterns of somatic copy number alteration

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

STAR: ultrafast universal RNA-seq aligner

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Xenome--a tool for classifying reads from xenograft samples.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

RNA-SeQC: RNA-seq metrics for quality control and process optimization

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Patient-derived tumour xenografts as models for oncology drug development

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Molecular profiling of patient-derived breast cancer xenografts

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Tumor grafts derived from women with breast cancer authentically reflect tumor pathology, growth, metastasis and disease outcomes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Preclinical development of molecular-targeted agents for cancer

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

Breast Cancer in the Personal Genomics Era

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5755132

10.1186/S12864-017-4414-Y

23 May 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

2 June 2020

1100202261

0 references

Fatcat ID

release_4w45ca5a3vauhemukv2fnackrq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/4w45ca5a3vauhemukv2fnackrq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29304755%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

PubMed publication ID

29304755

1 reference