A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds (Q28598343)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Maurizio Callari

5

1 reference

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31 May 2020

José L Sandoval

8

1 reference

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31 May 2020

Ana Tufegdzic Vidakovic

10

1 reference

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31 May 2020

Stephen John Sammut

11

1 reference

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31 May 2020

Richard Baird

14

1 reference

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31 May 2020

Matthew D Eldridge

17

1 reference

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31 May 2020

Howard Lightfoot

20

1 reference

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31 May 2020

Elisabetta Marangoni

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Violeta Serra

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

27

Samuel Aparicio

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

22

Joe Gray

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

author name string

Alejandra Bruna

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Oscar M Rueda

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Ankita Sati Batra

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

John W Cassidy

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Linda Jones

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Elena Provenzano

13

1 reference

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31 May 2020

Peter Eirew

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

James Hadfield

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Anne McLaren-Douglas

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Andrew Barthorpe

19

1 reference

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31 May 2020

Mark J O'Connor

21

1 reference

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31 May 2020

Javier Cortes

23

1 reference

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31 May 2020

Alana L Welm

26

1 reference

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31 May 2020

Mathew J Garnett

29

1 reference

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31 May 2020

Rajbir Nath Batra

6

1 reference

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31 May 2020

Katherine Pogrebniak

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Jose Baselga

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Carlos Caldas

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

language of work or name

English

0 references

publication date

22 September 2016

0 references

published in

Cell

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

volume

167

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

page(s)

260-274.e22

1 reference

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31 May 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

31 May 2020

GSVA

object named as

GSVA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

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Systematic identification of genomic markers of drug sensitivity in cancer cells

7 April 2017

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

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Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

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The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

7 April 2017

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DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution

29 September 2017

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Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

29 September 2017

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29 September 2017

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Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer

29 September 2017

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29 September 2017

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Single-cell analysis reveals a stem-cell program in human metastatic breast cancer cells

29 September 2017

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Tumorigenesis: it takes a village

29 September 2017

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Prospective derivation of a living organoid biobank of colorectal cancer patients.

29 September 2017

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CopywriteR: DNA copy number detection from off-target sequence data

29 September 2017

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High-throughput functional genomics using CRISPR-Cas9.

29 September 2017

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REV7 counteracts DNA double-strand break resection and affects PARP inhibition

29 September 2017

1 reference

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MAD2L2 controls DNA repair at telomeres and DNA breaks by inhibiting 5' end resection

29 September 2017

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Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies

29 September 2017

1 reference

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Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.

29 September 2017

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Patient-derived models of acquired resistance can identify effective drug combinations for cancer.

29 September 2017

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DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

29 September 2017

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Patient-derived tumour xenografts as models for breast cancer drug development

29 September 2017

1 reference

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Patient-derived xenograft models: an emerging platform for translational cancer research

29 September 2017

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Genome-driven integrated classification of breast cancer validated in over 7,500 samples

29 September 2017

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VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants

29 September 2017

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PyClone: statistical inference of clonal population structure in cancer.

29 September 2017

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The implications of clonal genome evolution for cancer medicine

29 September 2017

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A new genome-driven integrated classification of breast cancer and its implications

29 September 2017

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GSVA: gene set variation analysis for microarray and RNA-seq data.

29 September 2017

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MATH, a novel measure of intratumor genetic heterogeneity, is high in poor-outcome classes of head and neck squamous cell carcinoma

29 September 2017

1 reference

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BRCA1-associated exclusion of 53BP1 from DNA damage sites underlies temporal control of DNA repair

29 September 2017

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A three-gene model to robustly identify breast cancer molecular subtypes

29 September 2017

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Subtype and pathway specific responses to anticancer compounds in breast cancer

29 September 2017

1 reference

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Oncogene addiction as a foundational rationale for targeted anti-cancer therapy: promises and perils

29 September 2017

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Molecular signatures database (MSigDB) 3.0.

29 September 2017

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Predicting relapse in patients with medulloblastoma by integrating evidence from clinical and genomic features

29 September 2017

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Therapeutic potential of poly(ADP-ribose) polymerase inhibitor AG014699 in human cancers with mutated or methylated BRCA1 or BRCA2.

29 September 2017

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Allele-specific copy number analysis of tumors

29 September 2017

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Cell line-based platforms to evaluate the therapeutic efficacy of candidate anticancer agents

29 September 2017

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Efficacy and pharmacodynamic effects of bosutinib (SKI-606), a Src/Abl inhibitor, in freshly generated human pancreas cancer xenografts

29 September 2017

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A new model of patient tumor-derived breast cancer xenografts for preclinical assays

29 September 2017

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beadarray: R classes and methods for Illumina bead-based data.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037319

The search for synergy: a critical review from a response surface perspective.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037319

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037319

Erratum: The somatic mutation profiles of 2,433 breast cancers refine their genomic and transcriptomic landscapes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037319

Predicting functional effect of human missense mutations using PolyPhen-2.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037319

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037319

Examining the utility of patient-derived xenograft mouse models.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037319

The shaping and functional consequences of the microRNA landscape in breast cancer.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037319

HSP90 inhibition is effective in breast cancer: a phase II trial of tanespimycin (17-AAG) plus trastuzumab in patients with HER2-positive metastatic breast cancer progressing on trastuzumab.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037319

10.1016/J.CELL.2016.08.041

27 November 2018

Identifiers

DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

release_kzzjygnz5vf2vldxygqbldbefm

31 May 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kzzjygnz5vf2vldxygqbldbefm

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27641504%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

2 references