Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics (Q47220653)

12 January 2018

title

Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics (English)

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12 January 2018

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7

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12 January 2018

Nino Nikolovski

object named as

Nino Nikolovski

1

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Tim J Stevens

object named as

Tim J Stevens

5

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Kathryn Lilley

8

object named as

Kathryn S Lilley

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12 January 2018

author name string

Denis Rubtsov

2

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12 January 2018

Marcelo P Segura

3

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12 January 2018

Godfrey P Miles

4

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12 January 2018

Tom P J Dunkley

6

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12 January 2018

Paul Dupree

9

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12 January 2018

language of work or name

English

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publication date

24 August 2012

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12 January 2018

published in

Plant Physiology

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12 January 2018

volume

160

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12 January 2018

issue

2

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12 January 2018

page(s)

1037-1051

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12 January 2018

The Golgi-localized Arabidopsis endomembrane protein12 contains both endoplasmic reticulum export and Golgi retention signals at its C terminus.

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Regulation of plasmodesmatal permeability and stomatal patterning by the glycosyltransferase-like protein KOBITO1.

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Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis

29 September 2018

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Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan:galacturonosyltransferase complex

29 September 2018

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SignalP 4.0: discriminating signal peptides from transmembrane regions

29 September 2018

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O-glycosylated cell wall proteins are essential in root hair growth.

29 September 2018

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The Cooperative Activities of CSLD2, CSLD3, and CSLD5 Are Required for Normal Arabidopsis Development

29 September 2018

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Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall

29 September 2018

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Improved sub-cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions

29 September 2018

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Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass

29 September 2018

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A comprehensive comparison of transmembrane domains reveals organelle-specific properties

29 September 2018

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A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking

29 September 2018

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29 September 2018

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Missing values in gel-based proteomics

29 September 2018

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Plant sphingolipids: decoding the enigma of the Sphinx

29 September 2018

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The Proteomics Identifications database: 2010 update

29 September 2018

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The plant Golgi apparatus: last 10 years of answered and open questions

29 September 2018

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Identification of plant cell wall mutants by means of a forward chemical genetic approach using hydrolases

29 September 2018

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The structure, function, and biosynthesis of plant cell wall pectic polysaccharides

29 September 2018

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A statistical framework for protein quantitation in bottom-up MS-based proteomics.

29 September 2018

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Cis-element- and transcriptome-based screening of root hair-specific genes and their functional characterization in Arabidopsis

29 September 2018

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Pausing of Golgi bodies on microtubules regulates secretion of cellulose synthase complexes in Arabidopsis

29 September 2018

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A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

A cellulose synthase-containing compartment moves rapidly beneath sites of secondary wall synthesis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Combination of several bioinformatics approaches for the identification of new putative glycosyltransferases in Arabidopsis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

An inositolphosphorylceramide synthase is involved in regulation of plant programmed cell death associated with defense in Arabidopsis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.).

29 September 2018

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

29 September 2018

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Sub-cellular localization of membrane proteins

29 September 2018

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Arabidopsis XXT5 gene encodes a putative alpha-1,6-xylosyltransferase that is involved in xyloglucan biosynthesis

29 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Disrupting two Arabidopsis thaliana xylosyltransferase genes results in plants deficient in xyloglucan, a major primary cell wall component.

29 September 2018

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Glycosyltransferases: structures, functions, and mechanisms

29 September 2018

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Golgi transporters: opening the gate to cell wall polysaccharide biosynthesis

29 September 2018

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Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis

29 September 2018

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A computational strategy to analyze label-free temporal bottom-up proteomics data

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Treatment of missing values for multivariate statistical analysis of gel-based proteomics data.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Reduced Number of Homogalacturonan Domains in Pectins of an Arabidopsis Mutant Enhances the Flexibility of the Polymer

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

A probabilistic treatment of the missing spot problem in 2D gel electrophoresis experiments.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

A gene from the cellulose synthase-like C family encodes a beta-1,4 glucan synthase

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Homogalacturonan synthesis in Arabidopsis thaliana requires a Golgi-localized protein with a putative methyltransferase domain.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Molecular characterization of two Arabidopsis thaliana glycosyltransferase mutants, rra1 and rra2, which have a reduced residual arabinose content in a polymer tightly associated with the cellulosic wall residue

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis

29 September 2018

1 reference

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SUBA: the Arabidopsis Subcellular Database.

29 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Visualization of cellulose synthase demonstrates functional association with microtubules.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Mapping the Arabidopsis organelle proteome

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

ARABINAN DEFICIENT 1 is a putative arabinosyltransferase involved in biosynthesis of pectic arabinan in Arabidopsis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

i-Tracker: for quantitative proteomics using iTRAQ.

29 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3461528

Diacidic motifs influence the export of transmembrane proteins from the endoplasmic reticulum in plant cells.

29 September 2018

1 reference

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The HHpred interactive server for protein homology detection and structure prediction

29 September 2018

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Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis.

29 September 2018

1 reference

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Protein homology detection by HMM-HMM comparison

29 September 2018

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Extractor for ESI quadrupole TOF tandem MS data enabled for high throughput batch processing

29 September 2018

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Novel cell wall architecture of isoxaben-habituated Arabidopsis suspension-cultured cells: global transcript profiling and cellular analysis

29 September 2018

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A complementary bioinformatics approach to identify potential plant cell wall glycosyltransferase-encoding genes

29 September 2018

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The MUR3 gene of Arabidopsis encodes a xyloglucan galactosyltransferase that is evolutionarily related to animal exostosins.

29 September 2018

1 reference

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An evolving hierarchical family classification for glycosyltransferases

29 September 2018

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Analysis of the plastidic phosphate translocator gene family in Arabidopsis and identification of new phosphate translocator-homologous transporters, classified by their putative substrate-binding site

29 September 2018

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Heparin and heparan sulfate biosynthesis

29 September 2018

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SAM (dependent) I AM: the S-adenosylmethionine-dependent methyltransferase fold

29 September 2018

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Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis

29 September 2018

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Glycoside hydrolases and glycosyltransferases: families and functional modules

29 September 2018

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Polysaccharide analysis using carbohydrate gel electrophoresis: a method to study plant cell wall polysaccharides and polysaccharide hydrolases

29 September 2018

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SUB1, an Arabidopsis Ca2+-binding protein involved in cryptochrome and phytochrome coaction

29 September 2018

1 reference

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

29 September 2018

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A proteomic analysis of organelles from Arabidopsis thaliana

29 September 2018

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Glycosyltransferase structure and mechanism

29 September 2018

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The plant Golgi apparatus.

29 September 2018

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Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

29 September 2018

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The destination for single-pass membrane proteins is influenced markedly by the length of the hydrophobic domain

29 September 2018

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Are glucocerebrosides the predominant sphingolipids in plant plasma membranes?

2 November 2018

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Analysis of the Arabidopsis IRX9/IRX9-L and IRX14/IRX14-L pairs of glycosyltransferase genes reveals critical contributions to biosynthesis of the hemicellulose glucuronoxylan

1 December 2018

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12 December 2020

The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis

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12 December 2020

Enzymatic fingerprinting of Arabidopsis pectic polysaccharides using polysaccharide analysis by carbohydrate gel electrophoresis (PACE)

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12 December 2020

GAPP: a fully automated software for the confident identification of human peptides from tandem mass spectra

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12 December 2020

Quantitative proteomic approach to study subcellular localization of membrane proteins

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12 December 2020

KOBITO1 encodes a novel plasma membrane protein necessary for normal synthesis of cellulose during cell expansion in Arabidopsis

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12 December 2020

Organelle identification and proteomics in plant cells

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12 December 2020

Localisation and characterisation of cell wall mannan polysaccharides in Arabidopsis thaliana

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12 December 2020

Tissue fractionation. Past and present

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12 December 2020

Localization of organelle proteins by isotope tagging (LOPIT)

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12 December 2020

Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis

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12 December 2020

Identifiers

DOI

10.1104/PP.112.204263

1 reference

12 January 2018

PMC publication ID

3461528

0 references

1 reference

12 January 2018