Detection of proteome diversity resulted from alternative splicing is limited by trypsin cleavage specificity. (Q47313691)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

title

Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

alternative mRNA splicing, via spliceosome

6 April 2020

main subject

1 reference

3

1 reference

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6 April 2020

author name string

Xiaojing Wang

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

Simona G Codreanu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

Kai Li

4

1 reference

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6 April 2020

Daniel C Liebler

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

Bing Zhang

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

Matthew C Chambers

5

1 reference

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6 April 2020

publication date

8 December 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

Molecular & Cellular Proteomics

6 April 2020

published in

1 reference

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6 April 2020

volume

17

1 reference

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6 April 2020

issue

3

1 reference

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6 April 2020

page(s)

422-430

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

Impact of Alternative Splicing on the Human Proteome

6 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

The ribosome-engaged landscape of alternative splicing

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Alternative Splicing May Not Be the Key to Proteome Complexity

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Splice junctions are constrained by protein disorder

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Most highly expressed protein-coding genes have a single dominant isoform.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

MS-GF+ makes progress towards a universal database search tool for proteomics

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Proteogenomic characterization of human colon and rectal cancer

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Mass-spectrometry-based draft of the human proteome

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Global proteome analysis of the NCI-60 cell line panel

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

A cross-platform toolkit for mass spectrometry and proteomics

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Proteogenomics to discover the full coding content of genomes: a computational perspective

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Alternative isoform regulation in human tissue transcriptomes

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Splicing and the evolution of proteins in mammals

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Improving gene annotation using peptide mass spectrometry

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

How did alternative splicing evolve?

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Most Alternative Isoforms Are Not Functionally Important.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

The Relationship between Alternative Splicing and Proteomic Complexity.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Trypsin cleaves exclusively C-terminal to arginine and lysine residues

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836368

Intron–exon splice junctions map at protein surfaces

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29222161

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.RA117.000155

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29222161%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

PubMed publication ID

29222161

1 reference