Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues. (Q47417501)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29124938%20AND%20SRC:MED&resulttype=core&format=json

1 April 2020

title

Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues (English)

1 reference

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1 April 2020

1 reference

17

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1 April 2020

Richard D. Smith

21

1 reference

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1 April 2020

Tao Liu

5

1 reference

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1 April 2020

Stefani Thomas

6

1 reference

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1 April 2020

Sherri R Davies

13

1 reference

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1 April 2020

Hui Zhang

25

1 reference

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1 April 2020

20

Karin D Rodland

1 reference

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1 April 2020

Christopher R Kinsinger

11

object named as

Christopher R Kinsinger

1 reference

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1 April 2020

author name string

Jian-Ying Zhou

1

1 reference

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1 April 2020

Lijun Chen

2

1 reference

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1 April 2020

Bai Zhang

3

1 reference

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1 April 2020

Yuan Tian

4

1 reference

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1 April 2020

Li Chen

7

1 reference

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1 April 2020

Michael Schnaubelt

8

1 reference

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1 April 2020

Emily Boja

9

1 reference

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1 April 2020

Tara Hiltke

10

1 reference

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1 April 2020

Henry Rodriguez

12

1 reference

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1 April 2020

Shunqiang Li

14

1 reference

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1 April 2020

Jacqueline E Snider

15

1 reference

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1 April 2020

Petra Erdmann-Gilmore

16

1 reference

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1 April 2020

R Reid Townsend

18

1 reference

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1 April 2020

Matthew J Ellis

19

1 reference

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1 April 2020

Steven A Carr

22

1 reference

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1 April 2020

Zhen Zhang

23

1 reference

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1 April 2020

Daniel W Chan

24

1 reference

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1 April 2020

publication date

16 November 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29124938%20AND%20SRC:MED&resulttype=core&format=json

Journal of Proteome Research

1 April 2020

published in

1 reference

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1 April 2020

volume

16

1 reference

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1 April 2020

issue

12

1 reference

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1 April 2020

page(s)

4523-4530

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Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

1 April 2020

cites work

1 reference

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Proteogenomics connects somatic mutations to signalling in breast cancer

10 July 2018

1 reference

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Advances in mass spectrometry-based clinical biomarker discovery

10 July 2018

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Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

10 July 2018

1 reference

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Accuracy and Reproducibility in Quantification of Plasma Protein Concentrations by Mass Spectrometry without the Use of Isotopic Standards

10 July 2018

1 reference

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The 2012/2013 ABRF Proteomic Research Group Study: Assessing Longitudinal Intralaboratory Variability in Routine Peptide Liquid Chromatography Tandem Mass Spectrometry Analyses

10 July 2018

1 reference

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Is label-free LC-MS/MS ready for biomarker discovery?

10 July 2018

1 reference

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DIGESTIF: a universal quality standard for the control of bottom-up proteomics experiments.

10 July 2018

1 reference

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MS-GF+ makes progress towards a universal database search tool for proteomics

10 July 2018

1 reference

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Proteogenomic characterization of human colon and rectal cancer

10 July 2018

1 reference

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Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels

10 July 2018

1 reference

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Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins

10 July 2018

1 reference

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Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium

10 July 2018

1 reference

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Statistical design for biospecimen cohort size in proteomics-based biomarker discovery and verification studies

10 July 2018

1 reference

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Endocrine-therapy-resistant ESR1 variants revealed by genomic characterization of breast-cancer-derived xenografts

10 July 2018

1 reference

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Energy dependence of HCD on peptide fragmentation: stepped collisional energy finds the sweet spot

10 July 2018

1 reference

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Comparison of label-free and label-based strategies for proteome analysis of hepatoma cell lines.

10 July 2018

1 reference

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Development of a 5-plex SILAC method tuned for the quantitation of tyrosine phosphorylation dynamics

10 July 2018

1 reference

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Trauma-associated human neutrophil alterations revealed by comparative proteomics profiling

10 July 2018

1 reference

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iTRAQ-Based and Label-Free Proteomics Approaches for Studies of Human Adenovirus Infections

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Defining, comparing, and improving iTRAQ quantification in mass spectrometry proteomics data

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Neutron-encoded mass signatures for multiplexed proteome quantification

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

iTRAQ quantitative proteomics in the analysis of tears in dry eye patients

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis

10 July 2018

1 reference

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An insight into iTRAQ: where do we stand now?

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Improved precision of iTRAQ and TMT quantification by an axial extraction field in an Orbitrap HCD cell

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Peptide labeling with isobaric tags yields higher identification rates using iTRAQ 4-plex compared to TMT 6-plex and iTRAQ 8-plex on LTQ Orbitrap

10 July 2018

1 reference

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Genome remodelling in a basal-like breast cancer metastasis and xenograft

10 July 2018

1 reference

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Addressing accuracy and precision issues in iTRAQ quantitation

10 July 2018

1 reference

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iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly".

10 July 2018

1 reference

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Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Temporal profiling of the adipocyte proteome during differentiation using a five-plex SILAC based strategy.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Reproducibility assessment of relative quantitation strategies for LC-MS based proteomics

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine-specific isobaric tags

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Mass spectrometry-based proteomics turns quantitative

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

A simple method for displaying the hydropathic character of a protein

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

NeuCode labels for relative protein quantification.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

The potential cost of high-throughput proteomics

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

14 August 2018

1 reference

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Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850958

Cancer biomarker discovery in plasma using a tissue-targeted proteomic approach

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29124938

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29124938

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/ACS.JPROTEOME.7B00362

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29124938%20AND%20SRC:MED&resulttype=core&format=json

1 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29124938%20AND%20SRC:MED&resulttype=core&format=json

1 April 2020

PubMed publication ID

29124938

1 reference