The gene identification problem: an overview for developers. (Q47906926)

6 February 2018

title

The gene identification problem: an overview for developers. (English)

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6 February 2018

author name string

Fickett JW

series ordinal

1

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6 February 2018

publication date

1 March 1996

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6 February 2018

published in

Computers & Chemistry

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6 February 2018

volume

20

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6 February 2018

issue

1

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6 February 2018

page(s)

103-118

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6 February 2018

Complementary DNA sequencing: expressed sequence tags and human genome project

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Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.

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Deriving non-homogeneous DNA Markov chain models by cluster analysis algorithm minimizing multiple alignment entropy.

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New genes in old sequence: a strategy for finding genes in the bacterial genome

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Intrinsic and extrinsic approaches for detecting genes in a bacterial genome

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Organization and expression of eucaryotic split genes coding for proteins

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Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences

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Expectation maximization algorithm for identifying protein-binding sites with variable lengths from unaligned DNA fragments

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Eukaryotic start and stop translation sites.

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Isolation of genes from complex sources of mammalian genomic DNA using exon amplification.

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Identifying coding exons by similarity search: alu-derived and other potentially misleading protein sequences

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Database of ancient sequences

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Detecting frame shifts by amino acid sequence comparison

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Some useful statistical properties of position-weight matrices

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A streamlined random sequencing strategy for finding coding exons.

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[15] k-tuple frequency analysis: From intron/exon discrimination to T-cell epitope mapping

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7 January 2021

Gene structure prediction by linguistic methods.

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7 January 2021

Compilation of vertebrate-encoded transcription factors

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7 January 2021

Determination of eukaryotic protein coding regions using neural networks and information theory

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7 January 2021

Recognition of protein coding regions in DNA sequences

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7 January 2021

Inferring genes from open reading frames

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7 January 2021

ORFs and genes: how strong a connection?

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7 January 2021

Assessment of protein coding measures

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7 January 2021

Base compositional structure of genomes

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7 January 2021

Statistical analysis of mammalian pre-mRNA splicing sites.

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7 January 2021

Computer prediction of the exon-intron structure of mammalian pre-mRNAs

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7 January 2021

Prediction of function in DNA sequence analysis

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7 January 2021

A relational database of transcription factors

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7 January 2021

Identification of protein coding regions by database similarity search

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7 January 2021

Approximations to profile score distributions

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7 January 2021

Ancient conserved regions in new gene sequences and the protein databases

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7 January 2021

Profile analysis: detection of distantly related proteins

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7 January 2021

Prediction of gene structure

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7 January 2021

Distinctive sequence features in protein coding genic non-coding, and intergenic human DNA.

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A survey on intron and exon lengths

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7 January 2021

Automated assembly of protein blocks for database searching

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7 January 2021

Prediction of structural and functional features of protein and nucleic acid sequences by artificial neural networks

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7 January 2021

The prediction of exons through an analysis of spliceable open reading frames

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7 January 2021

Prototypic sequences for human repetitive DNA

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7 January 2021

Software trapping: a strategy for finding genes in large genomic regions

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Complexity charts can be used to map functional domains in DNA

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7 January 2021

Distance analysis helps to establish characteristic motifs in intron sequences

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7 January 2021

Yeast chromosome III: new gene functions.

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7 January 2021

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7 January 2021

A hidden Markov model that finds genes in E. coli DNA

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7 January 2021

Hidden Markov models in computational biology. Applications to protein modeling

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7 January 2021

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

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7 January 2021

A transcribed gene in an intron of the human factor VIII gene

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7 January 2021

A dictionary of transcription control sequences.

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7 January 2021

Evaluation of the exon predictions of the GRAIL software

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https://api.crossref.org/works/10.1016%2FS0097-8485%2896%2980012-X

7 January 2021

Alternative mRNA splicing

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7 January 2021

A method for measuring the non-random bias of a codon usage table

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7 January 2021

Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins

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7 January 2021

Escherichia colipromoter sequences predictin vitroRNA polymerase selectivity

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7 January 2021

Prediction of splice junctions in mRNA sequences

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7 January 2021

Relationship between the total size of exons and introns in protein-coding genes of higher eukaryotes

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7 January 2021

Construction of a dictionary of sequence motifs that characterize groups of related proteins

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7 January 2021

Signals for the selection of a splice site in pre-mRNA. Computer analysis of splice junction sequences and like sequences

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7 January 2021

The complete DNA sequence of yeast chromosome III

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7 January 2021

Correlation approach to identify coding regions in DNA sequences

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7 January 2021

Predictive motifs derived from cytosine methyltransferases

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7 January 2021

The density of transcriptional elements in promoter and non-promoter sequences.

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7 January 2021

Large scale bacterial gene discovery by similarity search.

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7 January 2021

Construction of a facsimile data set for large genome sequence analysis

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7 January 2021

Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project

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7 January 2021

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

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7 January 2021

Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity

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7 January 2021

Structure of vertebrate genes: a statistical analysis implicating selection

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7 January 2021

Finding sequence motifs in groups of functionally related proteins

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7 January 2021

Automatic generation of primary sequence patterns from sets of related protein sequences

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7 January 2021

Identification of coding regions in genomic DNA sequences: an application of dynamic programming and neural networks

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7 January 2021

Codon preference and its use in identifying protein coding regions in long DNA sequences

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7 January 2021

Finding protein coding regions in genomic sequences

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7 January 2021

Combined use of sequence similarity and codon bias for coding region identification

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7 January 2021

Consensus patterns in DNA.

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7 January 2021

The C. elegans genome sequencing project: a beginning

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7 January 2021

Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments

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7 January 2021

Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach

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7 January 2021

Protein-DNA recognition: new perspectives and underlying themes

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7 January 2021

The biochemistry of 3'-end cleavage and polyadenylation of messenger RNA precursors.

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7 January 2021

2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans

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7 January 2021

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Identifiers

DOI

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6 February 2018

DBLP publication ID

journals/candc/Fickett96

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DBLP Dataset 2021-01-02

28 January 2021

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6 February 2018