Identifying and characterizing substrates of the RNase E/G family of enzymes. (Q52850214)

8 May 2018

title

Identifying and characterizing substrates of the RNase E/G family of enzymes. (English)

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8 May 2018

Kenneth J McDowall

3

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author name string

Louise Kime

series ordinal

1

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8 May 2018

Stefanie S Jourdan

series ordinal

2

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8 May 2018

language of work or name

English

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publication date

1 January 2008

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8 May 2018

published in

Methods in Enzymology

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8 May 2018

volume

447

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8 May 2018

page(s)

215-241

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8 May 2018

Mechanism of RNA silencing by Hfq-binding small RNAs

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RNase E activity is conferred by a single polypeptide: overexpression, purification, and properties of the ams/rne/hmp1 gene product

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Critical features of a conserved RNA stem-loop important for feedback regulation of RNase E synthesis

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Specificity of Escherichia coli endoribonuclease RNase E: in vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site.

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RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity.

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Sensing of 5' monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo

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Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay

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Characterization of Aquifex aeolicus RNase E/G.

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Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E 1 1Edited by I. B. Holland

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Extensive overproduction of the AdhE protein by rng mutations depends on mutations in the cra gene or in the Cra-box of the adhE promoter

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RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

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RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity

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Gene 32 transcription and mRNA processing in T4-related bacteriophages

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Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro

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7 January 2021

Ribonuclease E is a 5'-end-dependent endonuclease

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The RNA degradosome: life in the fast lane of adaptive molecular evolution

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The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site

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The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus

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7 January 2021

Site-specific RNase E cleavage of oligonucleotides and inhibition by stem-loops

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Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same

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7 January 2021

Proteins associated with RNase E in a multicomponent ribonucleolytic complex

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Escherichia coli endoribonuclease RNase E: autoregulation of expression and site-specific cleavage of mRNA

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Differential mRNA stability controls relative gene expression within a polycistronic operon

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A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

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Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease E and the identification of critical functional groups in RNA substrates

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Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation

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Coordinated, differential expression of two genes through directed mRNA cleavage and stabilization by secondary structures

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The gene specifying RNase E (rne) and a gene affecting mRNA stability (ams) are the same gene

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The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity.

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Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli

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Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5' end of 16S rRNA

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Interaction of the restriction endonuclease EcoRV with the deoxyguanosine and deoxycytidine bases in its recognition sequence

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MicroRNAs direct rapid deadenylation of mRNA

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Identifiers

DOI

1 reference

8 May 2018

1 reference

8 May 2018