Kinetics of promoter escape by bacterial RNA polymerase: effects of promoter contacts and transcription bubble collapse. (Q54286054)

27 May 2018

title

Kinetics of promoter escape by bacterial RNA polymerase: effects of promoter contacts and transcription bubble collapse. (English)

1 reference

27 May 2018

author name string

Je Ko

series ordinal

1

1 reference

27 May 2018

Tomasz Heyduk

series ordinal

2

1 reference

27 May 2018

language of work or name

English

0 references

publication date

1 October 2014

1 reference

27 May 2018

number of pages

10

1 reference

based on heuristic

inferred from page(s)

published in

Biochemical Journal

1 reference

27 May 2018

volume

463

1 reference

27 May 2018

issue

1

1 reference

27 May 2018

page(s)

135-144

1 reference

27 May 2018

RNA polymerase: the vehicle of transcription

cites work

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

How sigma docks to RNA polymerase and what sigma does

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase-induced strand separation of double helical DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Direct detection of abortive RNA transcripts in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Monitoring abortive initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

In vitro studies of transcript initiation by Escherichia coli RNA polymerase. 3. Influences of individual DNA elements within the promoter recognition region on abortive initiation and promoter escape

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Productive and abortive initiation of transcription in vitro at the lac UV5 promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

The transition from transcriptional initiation to elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Association of RNA polymerase with transcribed regions in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Promoter-proximal Pol II: when stalling speeds things up.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Promoter proximal pausing and the control of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Stalling of Escherichia coli RNA polymerase in the +6 to +12 region in vivo is associated with tight binding to consensus promoter elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Bacterial RNA polymerases: the wholo story

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Initial transcribed sequence mutations specifically affect promoter escape properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Function of E. coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Large-scale purification of synthetic oligonucleotides and carcinogen-modified oligodeoxynucleotides on a reverse-phase polystyrene (PRP-1) column

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Protein induced fluorescence enhancement as a single molecule assay with short distance sensitivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Kinetic control of Mg2+-dependent melting of duplex DNA ends by Escherichia coli RecBC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Fluorescent lifetime trajectories of a single fluorophore reveal reaction intermediates during transcription initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

A branched pathway in the early stage of transcription by Escherichia coli RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

GreA protein: a transcription elongation factor from Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Transcript cleavage factors from E. coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

In vitro studies of transcript initiation by Escherichia coli RNA polymerase. 1. RNA chain initiation, abortive initiation, and promoter escape at three bacteriophage promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Escherichia coli RNA polymerase contacts outside the -10 promoter element are not essential for promoter melting

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Direct tests of the energetic basis of abortive cycling in transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

Insights into the mechanism of initial transcription in Escherichia coli RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1042%2FBJ20140179

21 January 2018

Identifiers

DOI

10.1042/BJ20140179

1 reference

27 May 2018

1 reference

27 May 2018