Direct evaluation of a kinetic model for RecA-mediated DNA-strand exchange: the importance of nucleic acid dynamics and entropy during homologous genetic recombination. (Q54459493)

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English	Direct evaluation of a kinetic model for RecA-mediated DNA-strand exchange: the importance of nucleic acid dynamics and entropy during homologous genetic recombination.	scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

Direct evaluation of a kinetic model for RecA-mediated DNA-strand exchange: the importance of nucleic acid dynamics and entropy during homologous genetic recombination. (English)

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

author name string

Jie Xiao

1

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

Andrew M Lee

2

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

Scott F Singleton

3

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

publication date

1 August 2006

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Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

7

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

8

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

1265-1278

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

Initiation of genetic recombination and recombination-dependent replication

1 reference

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The bacterial RecA protein and the recombinational DNA repair of stalled replication forks

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The kinetics of oligonucleotide replacements

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Biochemistry of Genetic Recombination: Energetics and Mechanism of DNA Strand Exchange

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Synaptic complex revisited; a homologous recombinase flips and switches bases

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Parallel DNA triplexes, homologous recombination, and other homology-dependent DNA interactions

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A molecular model for RecA-promoted strand exchange via parallel triple-stranded helices

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Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: a model for homology search in homologous genetic recombination

1 reference

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Kinetic analysis of pairing and strand exchange catalyzed by RecA. Detection by fluorescence energy transfer.

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Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase

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Elucidating a key intermediate in homologous DNA strand exchange: structural characterization of the RecA-triple-stranded DNA complex using fluorescence resonance energy transfer

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How important are entropic contributions to enzyme catalysis?

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Electrostatic origin of the catalytic power of enzymes and the role of preorganized active sites

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Computer simulations of enzyme catalysis: methods, progress, and insights

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Kinetics and thermodynamics of triple-helix formation: effects of ionic strength and mismatches

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Unwinding associated with synapsis of DNA molecules by recA protein

1 reference

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RecA binding to a single double-stranded DNA molecule: a possible role of DNA conformational fluctuations

1 reference

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Does a stretched DNA structure dictate the helical geometry of RecA-like filaments?

1 reference

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Force-induced melting of the DNA double helix 1. Thermodynamic analysis

1 reference

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Equilibrium binding of single-stranded DNA to the secondary DNA binding site of the bacterial recombinase RecA.

1 reference

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The synapsis event in the homologous pairing of DNAs: RecA recognizes and pairs less than one helical repeat of DNA

1 reference

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RecA tests homology at both pairing and strand exchange

1 reference

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Exchange of DNA base pairs that coincides with recognition of homology promoted by E. coli RecA protein

1 reference

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RecA.oligonucleotide filaments bind in the minor groove of double-stranded DNA.

1 reference

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21 January 2018

Stable synapsis of homologous DNA molecules mediated by the Escherichia coli RecA protein involves local exchange of DNA strands

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.200600038

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A parallel DNA triplex as a model for the intermediate in homologous recombination.

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.200600038

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Quantitative RecA Protein Binding to the Hybrid Duplex Product of DNA Strand Exchange

1 reference

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Mechanism of peptide bond synthesis on the ribosome

1 reference

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Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.

1 reference

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Interaction of recA protein with single-stranded DNA. Quantitative aspects of binding affinity modulation by nucleotide cofactors

1 reference

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Preorganization of DNA: Design Principles for Improving Nucleic Acid Recognition by Synthetic Oligonucleotides

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The Bacterial RecA Protein as a Motor Protein

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Organized unidirectional waves of ATP hydrolysis within a RecA filament

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Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria

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Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7

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Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides

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A ubiquitous structural core

1 reference

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A common structural core in proteins active in DNA recombination and replication

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.200600038

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DNA-strand exchange promoted by RecA protein in the absence of ATP: implications for the mechanism of energy transduction in protein-promoted nucleic acid transactions

1 reference

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The specificity of the secondary DNA binding site of RecA protein defines its role in DNA strand exchange

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.200600038

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Direct evaluation of a mechanism for activation of the RecA nucleoprotein filament

1 reference

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The thermodynamics of template-directed DNA synthesis: base insertion and extension enthalpies

1 reference

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DNA bending by asymmetric phosphate neutralization

1 reference

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Reading the minor groove.

1 reference

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Protein-DNA hydrophobic recognition in the minor groove is facilitated by sugar switching

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.200600038

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Electrostatic mechanisms of DNA deformation

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.200600038

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Homologous pairing in stretched supercoiled DNA

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Unzipping DNA with optical tweezers: high sequence sensitivity and force flips

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Bubble Dynamics in Double-Stranded DNA

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Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder

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DNA dynamically directs its own transcription initiation

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A path for coevolution of recombinational DNA repair, transposition, and the common nucleotides

1 reference

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Ten remarks on peptide bond formation on the ribosome.

1 reference

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The ribosome as an entropy trap

1 reference

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What are the roles of substrate-assisted catalysis and proximity effects in peptide bond formation by the ribosome?

1 reference

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Molecular design and functional organization of the RecA protein

1 reference

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Structure and mechanism of Escherichia coli RecA ATPase

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.200600038

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What is the structure of the RecA-DNA filament?

1 reference

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The Activated Complex in Chemical Reactions

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Ground State and Transition State Contributions to the Rates of Intramolecular and Enzymatic Reactions

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Homologous pairing can occur before DNA strand separation in general genetic recombination

1 reference

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Identifiers

10.1002/CBIC.200600038

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 May 2018

http://europepmc.org/abstract/MED/16847846

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