RNA velocity of single cells (Q57173237)

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

0 references

9

Peter Lönnerberg

0 references

Sten Linnarsson

22

Sten Linnarsson

0 references

Amit Zeisel

3

Amit Zeisel

0 references

Gioele La Manno

1

Gioele La Manno

0 references

Peter V Kharchenko

23

Peter V Kharchenko

0 references

Igor Adameyko

21

Igor Adameyko

0 references

Ruslan Soldatov

2

Ruslan Soldatov

0 references

Hannah Hochgerner

5

Hannah Hochgerner

0 references

Katja Lidschreiber

7

Katja Lidschreiber

0 references

Maria Eleni Kastriti

8

Maria E Kastriti

0 references

Alessandro Furlan

10

Alessandro Furlan

0 references

Jean Fan

11

Jean Fan

0 references

Lars E Borm

12

Lars E Borm

0 references

David van Bruggen

14

David van Bruggen

0 references

Roger A. Barker

17

Roger Barker

0 references

Gonçalo Castelo-Branco

19

Gonçalo Castelo-Branco

0 references

Patrick Cramer

20

Patrick Cramer

0 references

author name string

Emelie Braun

4

0 references

Viktor Petukhov

6

0 references

Zehua Liu

13

0 references

Jimin Guo

15

0 references

Xiaoling He

16

0 references

Erik Sundström

describes a project that uses

18

0 references

language of work or name

English

0 references

publication date

August 2018

0 references

published in

Nature

0 references

volume

560

0 references

issue

7719

0 references

page(s)

494-498

0 references

10x Genomics Chromium

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

https://scigraph.springernature.com/pub.10.1038/s41586-018-0414-6

7 February 2021

exact match

0 references

cites work

dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

A single-cell survey of the small intestinal epithelium

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Multipotent peripheral glial cells generate neuroendocrine cells of the adrenal medulla.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Massively parallel digital transcriptional profiling of single cells

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

TT-seq maps the human transient transcriptome

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Single-cell genomics: coming of age

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

SnapShot-Seq: a method for extracting genome-wide, in vivo mRNA dynamics from a single total RNA sample

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Quantitative single-cell RNA-seq with unique molecular identifiers

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Prox1 postmitotically defines dentate gyrus cells by specifying granule cell identity over CA3 pyramidal cell fate in the hippocampus

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Coupled pre-mRNA and mRNA dynamics unveil operational strategies underlying transcriptional responses to stimuli.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Stochastic mechanisms of cell fate specification that yield random or robust outcomes.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

The glial nature of embryonic and adult neural stem cells

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Neuronal or glial progeny: regional differences in radial glia fate

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6130801

Genome-wide atlas of gene expression in the adult mouse brain

2 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41586-018-0414-6

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41586-018-0414-6

0 references

DBLP publication ID

journals/nature/MannoSZBHPLKLFF18

1 reference