Stability scale and atomic solvation parameters extracted from 1023 mutation experiments (Q58041733)

https://api.crossref.org/works/10.1002%2FPROT.10241

Dominant forces in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Affinities of amino acid side chains for solvent water

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Comparing the polarities of the amino acids: side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Membrane protein folding and stability: physical principles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

21 January 2018

Hydrophobicity regained.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Contribution of amino acid substitutions at two different interior positions to the conformational stability of human lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Contribution of polar groups in the interior of a protein to the conformational stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

ProTherm, version 2.0: thermodynamic database for proteins and mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Protein binding versus protein folding: the role of hydrophilic bridges in protein associations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Estimation of the maximum change in stability of globular proteins upon mutation of a hydrophobic residue to another of smaller size

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Residue depth: a novel parameter for the analysis of protein structure and stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Thermodynamic and structural studies of cavity formation in proteins suggest that loss of packing interactions rather than the hydrophobic effect dominates the observed energetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Selection of representative protein data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Determination of atomic desolvation energies from the structures of crystallized proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Excluded volume approximation to protein-solvent interaction. The solvent contact model

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Solvation energy in protein folding and binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Environment and exposure to solvent of protein atoms. Lysozyme and insulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Calculation of the free energy of association for protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

The interpretation of protein structures: Estimation of static accessibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Extracting hydrophobic free energies from experimental data: relationship to protein folding and theoretical models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Solvation: how to obtain microscopic energies from partitioning and solvation experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Energetics, stability, and prediction of transmembrane helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Volume changes on protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

The nature of the accessible and buried surfaces in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Hydrophobicity of amino acid residues in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

The role of subunit entropy in cooperative assembly. Nucleation of microtubules and other two-dimensional polymers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Co-operativity in protein-protein association. The structure and stability of the actin filament

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Quantitative comparison of the ability of hydropathy scales to recognize surface beta-strands in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Hydrophobic bonding and accessible surface area in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Polar group burial contributes more to protein stability than nonpolar group burial

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

An analysis of packing in the protein folding problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Core-packing constraints, hydrophobicity and protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Hydrophobic core packing and protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Packing is a key selection factor in the evolution of protein hydrophobic cores

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Folding thermodynamics of a model three-helix-bundle protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Native proteins are surface-molten solids: application of the Lindemann criterion for the solid versus liquid state

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Thermodynamics of an All-Atom Off-Lattice Model of the Fragment B ofStaphylococcalProtein A: Implication for the Origin of the Cooperativity of Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Contact order, transition state placement and the refolding rates of single domain proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Folding rate prediction using total contact distance

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

A simple model for calculating the kinetics of protein folding from three-dimensional structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Structural basis of amino acid alpha helix propensity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

A breakdown of symmetry in the folding transition state of protein L

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Mapping the interactions present in the transition state for unfolding/folding of FKBP12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

From snapshot to movie: phi analysis of protein folding transition states taken one step further

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Hydrophobic core substitutions in calbindin D9k: effects on stability and structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Binding of amino acid side chains to preformed cavities: interaction of serine proteinases with turkey ovomucoid third domains with coded and noncoded P1 residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

The transition of bovine trypsinogen to a trypsin-like state upon strong ligand binding. II. The binding of the pancreatic trypsin inhibitor and of isoleucine-valine and of sequentially related peptides to trypsinogen and to p-guanidinobenzoate-tryp

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Directed mutagenesis and barnase-barstar recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Reshaping human antibodies: grafting an antilysozyme activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Direct Fluorometric Determination of a Dissociation Constant as Low as 10−10 M for the Subtilisin BPN′-Protein Proteinase Inhibitor (Streptomyces Subtilisin Inhibitor) Complex by a Single Photon Counting Technique1

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

A preference-based free-energy parameterization of enzyme-inhibitor binding. Applications to HIV-1-protease inhibitor design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Thermodynamics of gelation of sickle cell deoxyhemoglobin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Conformation of proinsulin. A comparison of insulin and proinsulin self-association at neutral pH.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Interatomic potentials and solvation parameters from protein engineering data for buried residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

The formation of a native-like structure containing eight conserved hydrophobic residues is rate limiting in two-state protein folding of ACBP

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Effect of Conformational Flexibility and Solvation on Receptor-Ligand Binding Free Energies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Local interactions as a structure determinant for protein molecules: II

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

A new scale for side-chain contribution to protein stability based on the empirical stability analysis of mutant proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

The folding of an immunoglobulin-like Greek key protein is defined by a common-core nucleus and regions constrained by topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Effects of core mutations on the folding of a beta-sheet protein: implications for backbone organization in the I-state

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Trypsin-pancreatic trypsin inhibitor association. Dynamics of the interaction and role of disulfide bridges

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241

Inhibition of porcine glandular kallikreins by structurally homologous proteinase inhibitors of the Kunitz (Trasylol) type. Significance of the basic nature of amino acid residues in subside positions for kallikrein inhibition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10241