Locating potential enhancer elements by comparative genomics using the EEL software (Q58054176)

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Assessing computational tools for the discovery of transcription factor binding sites

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Ultraconserved Elements in the Human Genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

A Discriminative Model for Identifying Spatial cis-Regulatory Modules

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

MSCAN: identification of functional clusters of transcription factor binding sites

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Genome-wide identification of cis-regulatory sequences controlling blood and endothelial development.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

A probabilistic method to detect regulatory modules

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Searching for statistically significant regulatory modules

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Applied bioinformatics for the identification of regulatory elements

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

High-throughput assay for determining specificity and affinity of protein-DNA binding interactions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

The human genome browser at UCSC

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56

Tandem repeats finder: a program to analyze DNA sequences

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2006.56