Repair of UV lesions in silenced chromatin provides in vivo evidence for a compact chromatin structure (Q73712389)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12882973%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

title

Repair of UV lesions in silenced chromatin provides in vivo evidence for a compact chromatin structure (English)

1 reference

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6 November 2019

author name string

Magdalena Livingstone-Zatchej

1

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6 November 2019

Rosanna Marcionelli

2

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6 November 2019

Kathrin Möller

3

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6 November 2019

Remko de Pril

4

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6 November 2019

Fritz Thoma

5

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6 November 2019

language of work or name

English

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publication date

25 July 2003

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Journal of Biological Chemistry

6 November 2019

number of pages

9

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based on heuristic

inferred from page(s)

published in

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6 November 2019

volume

278

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6 November 2019

issue

39

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6 November 2019

page(s)

37471-37479

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Breaking through to the other side: silencers and barriers

6 November 2019

cites work

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The molecular biology of the SIR proteins

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Transcriptional silencing at Saccharomyces telomeres: implications for other organisms

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Common themes in mechanisms of gene silencing

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Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription

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Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage

21 January 2018

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Telomere folding is required for the stable maintenance of telomere position effects in yeast

21 January 2018

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Limitations of silencing at native yeast telomeres

21 January 2018

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Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast

21 January 2018

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Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I.

21 January 2018

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SIR3 and SIR4 proteins are required for the positioning and integrity of yeast telomeres

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The histone deacetylase RPD3 counteracts genomic silencing in Drosophila and yeast

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Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast

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A core nucleosome surface crucial for transcriptional silencing.

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Perinuclear localization of chromatin facilitates transcriptional silencing

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Nuclear organization and transcriptional silencing in yeast.

21 January 2018

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The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae

21 January 2018

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Evidence for silencing compartments within the yeast nucleus: a role for telomere proximity and Sir protein concentration in silencer-mediated repression

21 January 2018

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Localization of yeast telomeres to the nuclear periphery is separable from transcriptional repression and telomere stability functions

21 January 2018

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Molecular model for telomeric heterochromatin in yeast

21 January 2018

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Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast

21 January 2018

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Histone acetylation and deacetylation in yeast

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Telomere looping permits gene activation by a downstream UAS in yeast

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Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing

21 January 2018

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Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin

21 January 2018

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Transcriptional silencing in yeast is associated with reduced nucleosome acetylation

21 January 2018

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Efficient transcriptional silencing in Saccharomyces cerevisiae requires a heterochromatin histone acetylation pattern

21 January 2018

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High-resolution structural analysis of chromatin at specific loci: Saccharomyces cerevisiae silent mating-type locus HMRa

21 January 2018

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High-resolution structural analysis of chromatin at specific loci: Saccharomyces cerevisiae silent mating type locus HMLalpha

21 January 2018

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Heterochromatin organization of a natural yeast telomere. Changes of nucleosome distribution driven by the absence of Sir3p

21 January 2018

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Saccharomyces telomeres assume a non-nucleosomal chromatin structure

21 January 2018

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Telomere-proximal DNA in Saccharomyces cerevisiae is refractory to methyltransferase activity in vivo

21 January 2018

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SIR repression of a yeast heat shock gene: UAS and TATA footprints persist within heterochromatin

21 January 2018

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Chromatin structure modulates DNA repair by photolyase in vivo

21 January 2018

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Light and dark in chromatin repair: repair of UV-induced DNA lesions by photolyase and nucleotide excision repair

21 January 2018

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Genome maintenance mechanisms for preventing cancer

21 January 2018

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Nucleotide excision repair in yeast

21 January 2018

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Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene

21 January 2018

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Site-specific DNA repair at the nucleosome level in a yeast minichromosome.

21 January 2018

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RNA polymerase II transcription suppresses nucleosomal modulation of UV-induced (6-4) photoproduct and cyclobutane pyrimidine dimer repair in yeast

21 January 2018

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Molecular cloning of RAD16, a gene involved in differential repair in Saccharomyces cerevisiae

21 January 2018

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The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae

21 January 2018

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Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

21 January 2018

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Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription

21 January 2018

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Repair of active and silenced rDNA in yeast: the contributions of photolyase and transcription-couples nucleotide excision repair

21 January 2018

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No "End of History" for photolyases

21 January 2018

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Enzymatic photoreactivation: 50 years and counting

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Site-specific repair of cyclobutane pyrimidine dimers in a positioned nucleosome by photolyase and T4 endonuclease V in vitro

21 January 2018

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21 January 2018

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Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase.

21 January 2018

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21 January 2018

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Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo

21 January 2018

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21 January 2018

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RNA polymerase II transcription inhibits DNA repair by photolyase in the transcribed strand of active yeast genes

21 January 2018

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Nucleotide excision repair and photolyase preferentially repair the nontranscribed strand of RNA polymerase III-transcribed genes in Saccharomyces cerevisiae

21 January 2018

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Differential repair of UV damage in Saccharomyces cerevisiae

21 January 2018

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Differential repair of UV damage in rad mutants of Saccharomyces cerevisiae: a possible function of G2 arrest upon UV irradiation

21 January 2018

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New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae

21 January 2018

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Mapping cyclobutane-pyrimidine dimers in DNA and using DNA-repair by photolyase for chromatin analysis in yeast

21 January 2018

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Mapping of nucleosome positions

21 January 2018

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Protein-DNA interactions and nuclease-sensitive regions determine nucleosome positions on yeast plasmid chromatin

21 January 2018

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Chromatin structure of the yeast URA3 gene at high resolution provides insight into structure and positioning of nucleosomes in the chromosomal context

21 January 2018

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Yeast heterochromatin: regulation of its assembly and inheritance by histones

21 January 2018

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Overcoming telomeric silencing: a trans-activator competes to establish gene expression in a cell cycle-dependent way.

21 January 2018

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Spreading of transcriptional repressor SIR3 from telomeric heterochromatin

21 January 2018

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Crystal structure of the nucleosome core particle at 2.8 A resolution

21 January 2018

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Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions

21 January 2018

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Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association

21 January 2018

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Dot1p modulates silencing in yeast by methylation of the nucleosome core

21 January 2018

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Disruptor of telomeric silencing-1 is a chromatin-specific histone H3 methyltransferase.

21 January 2018

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Quantitative analysis of the digestion of yeast chromatin by staphylococcal nuclease

21 January 2018

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ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleosomes

21 January 2018

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DNA damage in the nucleosome core is refractory to repair by human excision nuclease

21 January 2018

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The SWI/SNF chromatin-remodeling factor stimulates repair by human excision nuclease in the mononucleosome core particle

21 January 2018

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Relocalization of telomeric Ku and SIR proteins in response to DNA strand breaks in yeast

21 January 2018

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MEC1-dependent redistribution of the Sir3 silencing protein from telomeres to DNA double-strand breaks

21 January 2018

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Nuclease digestion of circular TRP1ARS1 chromatin reveals positioned nucleosomes separated by nuclease-sensitive regions

21 January 2018

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21 January 2018

Identifiers

DOI

10.1074/JBC.M306335200

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12882973%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

1 reference