CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex (Q85241331)

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15 February 2020

title

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex (English)

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1

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Valentine Murigneux

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Hugues Roest Crollius

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Hervé Le Hir

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author name string

Zhen Wang

3

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15 February 2020

Emélie Marquenet

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Isabelle Barbosa

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Olivier Le Tonquèze

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Yann Audic

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Luc Paillard

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publication date

21 October 2012

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Nature Structural & Molecular Biology

15 February 2020

published in

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volume

19

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page(s)

1124-1131

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issue

11

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https://scigraph.springernature.com/pub.10.1038/nsmb.2420

15 February 2020

exact match

0 references

cites work

Pre-mRNA processing reaches back to transcription and ahead to translation

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The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions

31 March 2020

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The ever-increasing complexities of the exon junction complex

31 March 2020

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Structural insights into the exon junction complex

31 March 2020

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Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA

31 March 2020

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The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity

31 March 2020

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The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA

31 March 2020

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Mechanism of ATP turnover inhibition in the EJC

31 March 2020

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The hierarchy of exon-junction complex assembly by the spliceosome explains key features of mammalian nonsense-mediated mRNA decay

31 March 2020

1 reference

Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment

31 March 2020

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5' exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly

31 March 2020

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Splicing remodels messenger ribonucleoprotein architecture via eIF4A3-dependent and -independent recruitment of exon junction complex components

31 March 2020

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Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly

31 March 2020

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Disassembly of exon junction complexes by PYM

31 March 2020

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Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: to die or not to die, that is the question

31 March 2020

1 reference

Execution of nonsense-mediated mRNA decay: what defines a substrate?

31 March 2020

1 reference

The multiple lives of NMD factors: balancing roles in gene and genome regulation

31 March 2020

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The exon junction complex differentially marks spliced junctions

31 March 2020

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The exon junction complex controls the splicing of MAPK and other long intron-containing transcripts in Drosophila

31 March 2020

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Proteins associated with the exon junction complex also control the alternative splicing of apoptotic regulators

31 March 2020

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Exon junction complex subunits are required to splice Drosophila MAP kinase, a large heterochromatic gene

31 March 2020

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Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization

31 March 2020

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Regulation of vertebrate embryogenesis by the exon junction complex core component Eif4a3.

31 March 2020

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The exon junction complex component Magoh controls brain size by regulating neural stem cell division.

31 March 2020

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Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome

31 March 2020

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HITS-CLIP: panoramic views of protein-RNA regulation in living cells

31 March 2020

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CLIP: a method for identifying protein-RNA interaction sites in living cells

31 March 2020

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CLIP identifies Nova-regulated RNA networks in the brain

31 March 2020

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BLAT—The BLAST-Like Alignment Tool

31 March 2020

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Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data

31 March 2020

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FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

31 March 2020

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Splicing double: insights from the second spliceosome

31 March 2020

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Splicing of U12-type introns deposits an exon junction complex competent to induce nonsense-mediated mRNA decay

31 March 2020

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Translation is required to remove Y14 from mRNAs in the cytoplasm

31 March 2020

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The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: dynamics of mRNP remodeling

31 March 2020

1 reference

DAVID: Database for Annotation, Visualization, and Integrated Discovery

31 March 2020

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

31 March 2020

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

31 March 2020

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The value of position-specific priors in motif discovery using MEME.

31 March 2020

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The SR protein family of splicing factors: master regulators of gene expression

31 March 2020

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DINAMelt web server for nucleic acid melting prediction

31 March 2020

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UNAFold: software for nucleic acid folding and hybridization

31 March 2020

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Flexibility in the site of exon junction complex deposition revealed by functional group and RNA secondary structure alterations in the splicing substrate

31 March 2020

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Eukaryotic initiation factor 4a3 is a selenium-regulated RNA-binding protein that selectively inhibits selenocysteine incorporation

31 March 2020

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EJCs at the heart of translational control

31 March 2020

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A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance

31 March 2020

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Efficient downregulation of immunoglobulin mu mRNA with premature translation-termination codons requires the 5'-half of the VDJ exon

31 March 2020

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Nonsense-mediated decay approaches the clinic

31 March 2020

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The abundance of RNPS1, a protein component of the exon junction complex, can determine the variability in efficiency of the Nonsense Mediated Decay pathway

31 March 2020

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Comparison of nonsense-mediated mRNA decay efficiency in various murine tissues

31 March 2020

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Involvement of SR proteins in mRNA surveillance

31 March 2020

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Perispeckles are major assembly sites for the exon junction core complex

31 March 2020

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A splicing-dependent regulatory mechanism that detects translation signals

31 March 2020

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PubMed

https://pubmed.ncbi.nlm.nih.gov/23085716

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12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NSMB.2420

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Dimensions Publication ID

15 February 2020

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