A functional feature analysis on diverse protein-protein interactions: application for the prediction of binding affinity (Q87797011)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24789327%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

title

A functional feature analysis on diverse protein-protein interactions: application for the prediction of binding affinity (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24789327%20AND%20SRC:MED&resulttype=core&format=json

protein-protein interaction

17 March 2020

main subject

1 reference

1 reference

Jiesi Luo

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24789327%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

Yanzhi Guo

2

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17 March 2020

Yun Zhong

3

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17 March 2020

Duo Ma

4

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17 March 2020

Wenling Li

5

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17 March 2020

Menglong Li

6

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17 March 2020

publication date

1 May 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24789327%20AND%20SRC:MED&resulttype=core&format=json

Journal of Computer - Aided Molecular Design

17 March 2020

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24789327%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

volume

28

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17 March 2020

issue

6

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17 March 2020

page(s)

619-629

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Structural characterisation and functional significance of transient protein-protein interactions

17 March 2020

cites work

1 reference

12 December 2020

MolMovDB: analysis and visualization of conformational change and structural flexibility

1 reference

12 December 2020

Discriminating between homodimeric and monomeric proteins in the crystalline state

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12 December 2020

Transient protein-protein interactions: structural, functional, and network properties

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12 December 2020

Principles of protein-protein interactions

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12 December 2020

The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures

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12 December 2020

The subunit interfaces of weakly associated homodimeric proteins

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12 December 2020

DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions.

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12 December 2020

Diversity of protein-protein interactions

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12 December 2020

Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50

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12 December 2020

NOXclass: prediction of protein-protein interaction types

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12 December 2020

Protein-protein binding affinity prediction on a diverse set of structures

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12 December 2020

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12 December 2020

Side-chain conformational changes upon Protein-Protein Association

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12 December 2020

A structure-based benchmark for protein-protein binding affinity

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12 December 2020

Novel knowledge-based mean force potential at atomic level

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12 December 2020

The atomic structure of protein-protein recognition sites

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12 December 2020

Protein-protein interaction at crystal contacts

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12 December 2020

Dissecting subunit interfaces in homodimeric proteins

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12 December 2020

Docking ligands into flexible and solvated macromolecules. 4. Are popular scoring functions accurate for this class of proteins?

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12 December 2020

A machine learning approach to predicting protein-ligand binding affinity with applications to molecular docking

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12 December 2020

Thioredoxin System from Deinococcus radiodurans

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12 December 2020

A dissection of specific and non-specific protein-protein interfaces

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12 December 2020

A simple physical model for binding energy hot spots in protein-protein complexes

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12 December 2020

Comparison of consensus scoring strategies for evaluating computational models of protein-ligand complexes

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12 December 2020

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

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12 December 2020

Quantitative prediction of protein-protein binding affinity with a potential of mean force considering volume correction.

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12 December 2020

Structure and thermodynamic characterization of the EphB4/Ephrin-B2 antagonist peptide complex reveals the determinants for receptor specificity

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12 December 2020

The structure of protein-protein recognition sites

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12 December 2020

Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different

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12 December 2020

Inference of macromolecular assemblies from crystalline state

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12 December 2020

Transient protein-protein interactions.

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12 December 2020

Large conformational changes in proteins: signaling and other functions

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12 December 2020

Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

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12 December 2020

Biomacromolecular quantitative structure-activity relationship (BioQSAR): a proof-of-concept study on the modeling, prediction and interpretation of protein-protein binding affinity

1 reference

12 December 2020

An analysis of conformational changes on protein-protein association: implications for predictive docking.

1 reference

12 December 2020

Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein-protein interactions

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12 December 2020

Conformational change in substrate binding, catalysis and product release: an open and shut case?

1 reference

12 December 2020

Predicting permanent and transient protein-protein interfaces

1 reference

12 December 2020

Conformational changes observed in enzyme crystal structures upon substrate binding

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12 December 2020

Prediction of binding constants of protein ligands: a fast method for the prioritization of hits obtained from de novo design or 3D database search programs

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12 December 2020

10.1007/S10822-014-9746-Y

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24789327%20AND%20SRC:MED&resulttype=core&format=json

journals/jcamd/LuoGZMLL14

17 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference